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一种个人DNA数据隐私保护算法的改进
引用本文:李光,王亚东,苏小红,李霞.一种个人DNA数据隐私保护算法的改进[J].生物信息学,2007,5(2):78-81.
作者姓名:李光  王亚东  苏小红  李霞
作者单位:哈尔滨工业大学计算机科学与工程系,哈尔滨,150001
基金项目:国家高技术研究发展计划(863计划)
摘    要:DNALA是一种个人DNA数据隐私保护的方法。该方法能有效的实现对个人DNA数据的隐私保护,但前期数据预处理复杂,而且后期处理精度不高。本文针对DNALA的这些缺点进行改进,形成了Savior算法。Savior算法在数据预处理阶段用双序列比对代替了DNALA中的多序列比对,在随后的处理中用随机爬山法代替了DNALA中的贪心策略,从而克服了原算法的缺点。对比实验说明:在达到同样的保护强度时,Savior对数据的改动小于DNALA,数据预处理耗费的时间小于DNALA。

关 键 词:个人DNA数据库  隐私保护  双序列比对  多序列比对  随机爬山法
文章编号:1672-5565(2007)-02-78-04
修稿时间:2006-03-272006-04-12

Improvement of a method of privacy protection for personal DNA data
LI Guang,WANG Ya-dong,SU Xiao-hong,LI Xia.Improvement of a method of privacy protection for personal DNA data[J].China Journal of Bioinformation,2007,5(2):78-81.
Authors:LI Guang  WANG Ya-dong  SU Xiao-hong  LI Xia
Institution:Department of Computer Science and Engineering, Harbin Institute of Technology, Harbin 150901, China
Abstract:For the development of DNA sequencing technology and biology,it is possible and needed to set up person-specific DNA databas- es.When setting up these databases,we must guarantee they are anonymous,that no one can find out whom a special DNA sequence is col- lected from.DNALA is a new method for doing this. Through overcoming the DNALA's disadvantage-the pretreatment is complex and the precision of classing is not high enough,a new method Savior is presented in this paper.Savior replaces the multiple alignment in DNALA with pairwise alignment between every tow sequences,and replaces the greedy algorithm in DNALA with stochastic hill-climbing.For doing this, it can overcome DNALA's shortcomings.The experiments show that when getting the same effect for protection,Savior use less time for pre- treatment and gets higher precision than DNALA.
Keywords:person-specific DNA database  privacy protection  pairwise alignment  multiple alignment  stochastic hill-climbing
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