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Non-Canonical Allostery in Cyclic Nucleotide Dependent Kinases
Affiliation:1. Department of Chemistry and Chemical Biology, McMaster University, Hamilton, Ontario, Canada;2. Department of Biochemistry and Biomedical Sciences, McMaster University, Hamilton, Ontario, Canada
Abstract:The cAMP- and cGMP-dependent protein kinases (PKA and PKG) are canonically activated by the corresponding cyclic nucleotides. However, both systems are also sensitive to a wide range of non-canonical allosteric effectors, such as reactive oxygen species, which induce the formation of regulatory inter- and intra-molecular disulfide bridges, and disease-related mutations (DRMs). Here, we present a combined analysis of representative non-canonical allosteric effectors for PKA and PKG, and we identify common molecular mechanisms underlying non-canonical allostery in these kinases, from shifts in dynamical regulatory equilibria to modulation of inter-protomer interactions. In addition, mutations may also drive oligomerization beyond dimerization, and possibly phase transitions, causing loss of kinase inhibitory function and amplifying the allosteric effects of DRMs. Hence non-canonical allosteric stimuli often result in constitutive kinase activation underlying either physiological control of downstream signaling pathways or pathological outcomes, from aortic aneurisms to cancer predisposition. Overall, PKA and PKG emerge as “pan-sensors” going well beyond canonical cyclic nucleotide activation, revealing their versatile roles as central signaling hubs.
Keywords:allostery  allosteric pluripotency  cAMP  cGMP  disulfide  AAD"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  k0035"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  acute aortic dissections  ACRO"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  k0045"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  Acrodysostosis  AI"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  k0055"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  autoinhibitory site  CNBD"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  k0065"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  cyclic nucleotide binding domain  CNC"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  k0075"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  Carney complex  cNMP"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  k0085"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  cyclic nucleotide  DD"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  k0095"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  dimerization-docking domain  DRM"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  k0105"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  disease-related mutations  H/D MS"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  k0115"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  hydrogen/deuterium exchange Mass Spectrometry  HNO"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  k0125"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  nitroxyl  activation constant  effective affinity  LLPS"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  k0155"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  liquid–liquid phase separation  LZ"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  k0165"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  leucine zipper domain  MYPT"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  k0175"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  myosin light chain phosphatase  PBC"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  k0185"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  phosphate binding cassette  PKA"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  k0195"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  protein kinase A or cAMP-dependent protein kinase  C"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  k0205"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  catalytic subunit  R"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  k0215"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  regulatory subunit  PKG"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  k0225"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  protein kinase G or cGMP-dependent protein kinase  ROS"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  k0235"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  reactive oxidative species  RQ mutation"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  k0245"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  arginine to glutamine substitution mutation  sGC"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  k0255"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  soluble guanylate cyclase  SMC"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  k0265"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  smooth muscle cells  TAA"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  k0275"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  thoracic aortic aneurisms
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