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Structural Studies Reveal Unique Non-canonical Regulators of G Protein Signaling Homology (RH) Domains in Sorting Nexins
Institution:1. Center for Computational Natural Sciences and Bioinformatics, International Institute of Information Technology, Hyderabad 500 032, India;2. Dr. Reddy''s Institute of Life Sciences, University of Hyderabad Campus, Hyderabad 500 046, India
Abstract:As a subgroup of sorting nexins (SNXs) that contain regulator of G protein signaling homology (RH) domain, SNX-RH proteins, including SNX13, SNX14 and SNX25, were proposed to play bifunctional roles in protein sorting and GPCR signaling regulation. However, mechanistic details of SNX-RH proteins functioning via RH domain remain to be illustrated. Here, we delineate crystal structures of the RH domains of SNX13 and SNX25, revealing a homodimer of SNX13 RH domain mediated by unique extended α4 and α5 helices, and a thiol modulated homodimer of SNX25-RH triggered by a unique cysteine on α6 helix. Further studies showed that RH domains of SNX-RH do not possess binding capacity toward Gα subunits, owing to the lack of critical residues for interaction. Thus, this study identifies a group of novel non-canonical RH domains that can act as a dimerization module in sorting nexins, which provides structural basis for mechanism studies on SNX-RH protein functions.
Keywords:RGS homology (RH) domain  Sorting nexins  Homodimer  X-ray crystallography  Intermolecular disulfide bond  RGS"}  {"#name":"keyword"  "$":{"id":"pc_ESRaJMqLX4"}  "$$":[{"#name":"text"  "_":"regulator of G protein signaling  RH"}  {"#name":"keyword"  "$":{"id":"pc_yNRyKh7zml"}  "$$":[{"#name":"text"  "_":"RGS homology  SNXs"}  {"#name":"keyword"  "$":{"id":"pc_Jmmvwj3x7C"}  "$$":[{"#name":"text"  "_":"Sorting nexins  PX"}  {"#name":"keyword"  "$":{"id":"pc_ZPk7SU9YCZ"}  "$$":[{"#name":"text"  "_":"Phox homology  DTT"}  {"#name":"keyword"  "$":{"id":"pc_cqC21mk8aG"}  "$$":[{"#name":"text"  "_":"Dithiothreitol  GRK2"}  {"#name":"keyword"  "$":{"id":"pc_pPgCAD5WCO"}  "$$":[{"#name":"text"  "_":"G protein-coupled receptor kinase 2  GAP"}  {"#name":"keyword"  "$":{"id":"pc_dj71V5v22h"}  "$$":[{"#name":"text"  "_":"GTPase accelerating protein  Co-IP"}  {"#name":"keyword"  "$":{"id":"pc_sJuq4CfHCS"}  "$$":[{"#name":"text"  "_":"Co-Immunoprecipitation  AF"}  {"#name":"keyword"  "$":{"id":"pc_7l8Ad7jnAo"}  "$$":[{"#name":"text"  "_":"AlphaFold2  RMSD"}  {"#name":"keyword"  "$":{"id":"pc_fGulxVE01j"}  "$$":[{"#name":"text"  "_":"Root mean square deviation  BLI"}  {"#name":"keyword"  "$":{"id":"pc_G87VWs1lZF"}  "$$":[{"#name":"text"  "_":"Bio-Layer interferometry  5-hydroxytryptamine subtype 6 receptor  EGFR"}  {"#name":"keyword"  "$":{"id":"pc_zRSbwfvrVT"}  "$$":[{"#name":"text"  "_":"Epidermal growth factor receptor  TGF-β"}  {"#name":"keyword"  "$":{"id":"pc_Oi28cBleI8"}  "$$":[{"#name":"text"  "_":"Transforming growth factor β  NF-κB"}  {"#name":"keyword"  "$":{"id":"pc_1lubNMpTgs"}  "$$":[{"#name":"text"  "_":"Nclear factor kappa B  IκBα"}  {"#name":"keyword"  "$":{"id":"pc_qdq5tvZp3C"}  "$$":[{"#name":"text"  "_":"Inhibitor of NF-κBα  AMF"}  {"#name":"keyword"  "$":{"id":"pc_jN55Dd1JSp"}  "$$":[{"#name":"text"  "_":"Aluminium magnesium fluoride  BAR"}  {"#name":"keyword"  "$":{"id":"pc_ljWijKzjoB"}  "$$":[{"#name":"text"  "_":"bin/amphiphysin/rvs  FERM"}  {"#name":"keyword"  "$":{"id":"pc_olo5hySrV3"}  "$$":[{"#name":"text"  "_":"band4  1/ezrin/radixin/moesin  PDZ"}  {"#name":"keyword"  "$":{"id":"pc_lP6f2jhlAm"}  "$$":[{"#name":"text"  "_":"postsynaptic density 95/discs large/zonula occludens-1  APC"}  {"#name":"keyword"  "$":{"id":"pc_FisijJUKCn"}  "$$":[{"#name":"text"  "_":"adenomatous polyposis coli
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