MADGene: retrieval and processing of gene identifier lists for the analysis of heterogeneous microarray datasets |
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Authors: | Baron Daniel Bihouée Audrey Teusan Raluca Dubois Emeric Savagner Frédérique Steenman Marja Houlgatte Rémi Ramstein Gérard |
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Affiliation: | INSERM U915, IRT-UN, University of Nantes, France. |
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Abstract: | MADGene is a software environment comprising a web-based database and a java application. This platform aims at unifying gene identifiers (ids) and performing gene set analysis. MADGene allows the user to perform inter-conversion of clone and gene ids over a large range of nomenclatures relative to 17 species. We propose a set of 23 functions to facilitate the analysis of gene sets and we give two microarray applications to show how MADGene can be used to conduct meta-analyses. AVAILABILITY: The MADGene resources are freely available online from http://www.madtools.org, a website dedicated to the analysis and annotation of DNA microarray data. |
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