a Lead Discovery Unit and Department of Molecular Design & Informatics NV Organon Scientific Development Group PO Box 20 5340 BH, Oss, The Netherlands
b Max-Planck-Institut fur Biochemie, D82152, Martinsried, Germany
Abstract:
Replacement of the noragmatine group in thrombin inhibitors with a ß-alanyl-guanidine group resulted in a nearly equipotent and more selective compound 8 despite the fact that the pKa of this P1 moiety is five orders of magnitude lower. Further modification resulted in a nonpeptide inhibitor with this ß-alanyl-guanidine group, compound 28. This is an active and selective thrombin inhibitor and in view of its nonpeptide/low basicity structure selected for further pharmacological studies.