Estimating population size using single‐nucleotide polymorphism‐based pedigree data |
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Authors: | Robert Spitzer Anita J. Norman Michael Schneider Göran Spong |
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Affiliation: | 1. Wildlife Ecology Group, Department of Wildlife, Fish and Environmental Studies, Swedish University of Agricultural Sciences, Ume?, Sweden;2. Molecular Ecology Group, Department of Wildlife, Fish and Environmental Studies, Swedish University of Agricultural Sciences, Ume?, Sweden;3. V?sterbotten County Administration, Ume?, Sweden;4. Forestry and Environmental Resources, College of Natural Resources, North Carolina State University, Raleigh, North Carolina |
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Abstract: | Reliable population estimates are an important aspect of sustainable wildlife management and conservation but can be difficult to obtain for rare and elusive species. Here, we test a new census method based on pedigree reconstruction recently developed by Creel and Rosenblatt (2013). Using a panel of 96 single‐nucleotide polymorphisms (SNPs), we genotyped fecal samples from two Swedish brown bear populations for pedigree reconstruction. Based on 433 genotypes from central Sweden (CS) and 265 from northern Sweden (NS), the population estimates (N = 630 for CS, N = 408 for NS) fell within the 95% CI of the official estimates. The precision and accuracy improved with increasing sampling intensity. Like genetic capture–mark–recapture methods, this method can be applied to data from a single sampling session. Pedigree reconstruction combined with noninvasive genetic sampling may thus augment population estimates, particularly for rare and elusive species for which sampling may be challenging. |
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Keywords: | Brown bear noninvasive sampling pedigree reconstruction population estimate rarefaction single‐nucleotide polymorphism
SNP
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