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Strainer: software for analysis of population variation in community genomic datasets |
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| Authors: | John M Eppley Gene W Tyson Wayne M Getz Jillian F Banfield |
| Affiliation: | (1) Department of Bioengineering, University of California, CA 94720 Berkeley, USA;(2) Department of Environmental Science, Policy and Management, University of California, CA 94720 Berkeley, USA;(3) Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, MA 02139 Cambridge, USA |
| Abstract: | BackgroundMetagenomic analyses of microbial communities that are comprehensive enough to provide multiple samples of most loci in the genomes of the dominant organism types will also reveal patterns of genetic variation within natural populations. New bioinformatic tools will enable visualization and comprehensive analysis of this sequence variation and inference of recent evolutionary and ecological processes. |
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