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Experimental design for efficient identification of gene regulatory networks using sparse Bayesian models
Authors:Florian Steinke  Matthias Seeger  Koji Tsuda
Affiliation:(1) Max Planck Institute for Biological Cybernetics, Spemannstr. 38, 72076 Tbingen, Germany
Abstract:

Background  

Identifying large gene regulatory networks is an important task, while the acquisition of data through perturbation experiments (e.g., gene switches, RNAi, heterozygotes) is expensive. It is thus desirable to use an identification method that effectively incorporates available prior knowledge – such as sparse connectivity – and that allows to design experiments such that maximal information is gained from each one.
Keywords:
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