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Enhanced validation of small-molecule ligands and carbohydrates in the Protein Data Bank
Authors:Zukang Feng  John D Westbrook  Raul Sala  Oliver S Smart  Gérard Bricogne  Masaaki Matsubara  Issaku Yamada  Shinichiro Tsuchiya  Kiyoko F Aoki-Kinoshita  Jeffrey C Hoch  Genji Kurisu  Sameer Velankar  Stephen K Burley  Jasmine Y Young
Institution:1. Research Collaboratory for Structural Bioinformatics Protein Data Bank, Institute for Quantitative Biomedicine, Rutgers, the State University of New Jersey, Piscataway, NJ 08854, USA;2. Global Phasing Ltd., Sheraton House, Castle Park, Cambridge CB3 0AX, UK;3. The Noguchi Institute, 1-9-7, Kaga, Itabashi-ku, Tokyo 173-0003, Japan;4. Faculty of Science and Engineering, Soka University, 1-236 Tangi-machi, Hachioji-shi, Tokyo 192-8577, Japan;5. Glycan & Life Systems Integration Center, Soka University, 1-236 Tangi-machi, Hachioji-shi, Tokyo 192-8577, Japan;6. Biological Magnetic Resonance Data Bank, Department of Molecular Biology and Biophysics, University of Connecticut, UConn Health, 263 Farmington Avenue, Farmington, CT 06030-3305, USA;7. Protein Data Bank Japan, Institute for Protein Research, Osaka University, 3-2 Yamadaoka, Suita-shi, Osaka 565-0871, Japan;8. Protein Data Bank in Europe, European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridgeshire CB10 1SD, UK;9. Department of Chemistry and Chemical Biology, Rutgers, the State University of New Jersey, Piscataway, NJ 08854, USA;10. Rutgers Cancer Institute of New Jersey, Robert Wood Johnson Medical School, New Brunswick, NJ 08903, USA;11. Research Collaboratory for Structural Bioinformatics Protein Data Bank, San Diego Supercomputer Center, University of California, San Diego, La Jolla, CA 92093, USA;12. Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA 92093, USA
Abstract:
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  • Keywords:Protein Data Bank  validation  3D macromolecular structure  PDB  structure data quality  structural biology  biocuration  small-molecule ligands  Worldwide Protein Data Bank  OneDep
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