首页 | 本学科首页   官方微博 | 高级检索  
     


Conformational energy of the 5-membered ring. Implication of geometric and energetic properties in the conformational characteristics
Authors:Abillon  E.
Affiliation:(1) Département de Biologie, Service de Biophysique, CEN SACLAY, F-91191 Gif/Yvette Cedex, France
Abstract:In a previous article (8) a geometrical study of the five-membered ring showed that: a) for the case of the 20 symmetrical C2 and Cs conformations, the pseudorotation formulae for the torsion angles are a geometrical property of the ring; b) geometrical considerations alone are unable to define the puckering amplitude, the bond angle values, and the pathway between two symmetrical conformations. Here we examine how the energy equations enable us to define the deformation amplitude chim, establish the bond angles expressions and check the energy invariability along the pseudorotation circuit. The problem is next developed fully in the case where the bond and torsional energy only are considered: the literal expression1 of chim is then given as a function of the bond angle OHgr which cancels out the bond angle energy. A numerical application is carried out on cyclopentane and the values of the parameters Kt, K1 and OHgr used in the Conformational energy calculations are considered.Notations used 1 i bond lengths equiv 1 in the case of the regular ring - chii torsional angles - PHgri bond angles - PHgr 3pgr/5 = 108Dagger - delta 4pgr/5 = 144Dagger - epsiv,i PHgriPHgr= complement to the 108Dagger bond angle PHgri - epsivT sum - E Conformational energy of the 5-membered ring - deltaE Conformational energy difference between planar and deformed ring - An Coefficients of the energy development in terms of sum - Eil Bond energy relative to atom i (associated with angle PHgri) - Kil Bond constant relative to atom i (associated with angle PHgri) - Eil Torsional energy relative to the ith bond (associated with angle chii) - kil Torsional constant relative to the ith bond (associated with angle chii) - OHgri Angle PHgri value corresponding to zero bond energy Eil (when the 5 atoms of the ring are identical, OHgri equiv OHgr) - rij Distance between atoms i and j - qi Charge carried by atom i - e Constant of proportionality including the effective dielectric constant - Aij, Bij, dij Coefficients dependent on the nature of the atoms i and j and accounted for in the Van der Waals energy and hydrogen bond expressions - S (rij) Electrostatic contribution to the hydrogen bond energy - P Pseudorotation phase angle - chim Maximum torsional angle value characterising the deformation amplitudeM
Keywords:Five-membered ring  Pseudorotation  Conformational analysis  Molecular geometry
本文献已被 SpringerLink 等数据库收录!
设为首页 | 免责声明 | 关于勤云 | 加入收藏

Copyright©北京勤云科技发展有限公司  京ICP备09084417号