Directionality and Coordination of Dehydration and Ring Formation during Biosynthesis of the Lantibiotic Nisin

The lantibiotic nisin is a potent antimicrobial substance, which contains unusual lanthionine rings and dehydrated amino acid residues and is produced by Lactococcus lactis. Recently, the nisin biosynthetic machinery has been applied to introduce lanthionine rings in peptides other than nisin with potential therapeutic use. Due to difficulties in the isolation of the proposed synthetase complex (NisBTC), mechanistic information concerning the enzymatic biosynthesis of nisin is scarce. Here, we present the molecular characterization of a number of nisin mutants that affect ring formation. We have investigated in a systematic manner how these mutations influence dehydration events, which are performed enzymatically by the dehydratase NisB. Specific mutations that hampered ring formation allowed for the dehydration of serine residues that directly follow the rings and are normally unmodified. The combined information leads to the conclusion that 1) nisin biosynthesis is an organized directional process that starts at the N terminus of the molecule and continues toward the C terminus, and 2) NisB and NisC are alternating enzymes, whose activities follow one after another in a repetitive way. Thus, the dehydration and cyclization processes are not separated in time and space. On the basis of these results and previous knowledge, a working model for the sequence of events in the maturation of nisin is proposed.Nisin is a lantibiotic produced by Lactococcus lactis, which has been known since 1928 (1, 2). This antimicrobial peptide is active against various Gram-positive bacteria and has attained commercial success as a food preservative (3). In addition to the wide industrial applications of nisin, it became also a model system to study various aspects of lantibiotic biosynthesis, regulation, and mode of action (2). Furthermore, recently, other applications of nisin have emerged. Its biosynthetic machinery can be successfully used to install dehydrated amino acids and lanthionine rings in peptides, which are either related or totally unrelated to nisin (4–11). This offers great opportunities to modulate the stability and activity of peptides that are used as therapeutics (8).The post-translational modified nisin molecule is classified as a member of the Group A lantibiotics (12). Mature nisin contains 34 amino acids, three of which are posttranslationally modified, and five thioether rings that are enzymatically formed upon cyclization of five free cysteines and five dehydroamino acid residues (Fig. 1). These peculiar modifications, which are very rare in nature, give nisin its exceptional stability against proteolysis and contribute greatly to its antimicrobial activity.Open in a separate windowFIGURE 1.Primary structure of prenisin and generated mutants. Dehydrated residues are shaded gray; serine 33 sometimes escapes dehydration and is shaded light gray. Serine at position 29 is never dehydrated in wild type prenisin. The impact of mutations on the dehydration pattern of new prenisin species is schematically depicted. Mutated residues are indicated by filled red circles. Newly formed dehydrated residues are pointed to by a black arrow. Letters A–E correspond to the five consecutive lanthionine rings in nisin.Nisin is synthesized ribosomally as a 57-amino acid residue-long polypeptide. Subsequently, it is directed to a putative synthetase complex that probably consists of three different proteins that include the dehydratase NisB, responsible for dehydration of serines and threonines to dehydroalanines and dehydrobutyrines, respectively; the cyclase NisC, which forms (methyl) lanthionine bridges between cysteines and dehydroamino acids; and the ABC transporter NisT, which performs transport across the lipid bilayer by consuming ATP. Newly synthesized and modified prenisin is still antimicrobially inactive. Only upon cleavage of the leader sequence that encompasses the first 23 amino acids by the dedicated protease NisP, an active molecule is liberated.Although there are data pointing to the existence of a synthetase complex that modifies nisin, such a complex has not been isolated so far. However, both NisB (13, 14) and NisC (13) were shown by specific antibody detection to localize at the cytoplasmic membrane, although some soluble signal was also detected. This localization gives NisBC the opportunity to interact with the transporter NisT, which is an integral membrane protein. Furthermore, co-immunoprecipitation and yeast two-hybrid studies suggested an interaction between members of the nisin modification machinery and nisin itself (13). The function of each member of the putative multimeric synthetase has been investigated in vivo by knock-out studies. It also has been demonstrated that subsequent steps in nisin biosynthesis can be performed separately. Dehydration, cyclization, and transport of the modified product were dissected in vivo, and also the dehydratase has been shown to perform enzymatic reactions without the presence of other members of the complex in vivo (7) although with very low efficiency. The cyclization activity of NisC was demonstrated in vitro (15), and the ABC transporter NisT was shown to be capable of transport of unmodified prenisin in vivo (10). Based on the available data, it is difficult to assess whether multimeric lanthionine complexes are indispensable for efficient nisin production and modification. However, in vivo localization studies and interaction experiments suggest that these proteins work in a concerted manner.Here, we present data that indicates a strong coordination between members of the nisin modification machinery. The analysis of sets of nisin mutants, where key residues that take part in ring formation as well as substitutions of residues that directly follow lanthionine structures, suggests a strong interdependency of dehydratase and cyclase activity. Moreover, the data indicate that these enzymes alternate during catalysis and that they are intertwined in time and space. Our data also suggest that nisin modification is an ordered process that proceeds consecutively from the N terminus of prenisin toward its C terminus. Based on the available literature data and the data presented here, we propose a model wherein nisin is being posttranslationally modified in consecutive steps from its N terminus toward its C terminus.