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Prediction of the interaction between spermidine and the G-G mismatch containing acceptor stem in tRNA: Molecular modeling,density functional theory,and molecular dynamics study
Authors:Yoshihiro Hayashi  Hajime Sugiyama  Akiko Suganami  Kyohei Higashi  Keiko Kashiwagi  Kazuei Igarashi  Susumu Kawauchi  Yutaka Tamura
Affiliation:1. Department of Organic and Polymeric Materials, Graduate School of Science and Engineering, Tokyo Institute of Technology, Tokyo 152-8522, Japan;2. Department of Bioinformatics, Graduate School of Medicine, Chiba University, Chiba 260-8670, Japan;3. Bio IT Development, Fujitsu Limited, Chiba 261-8588, Japan;4. Department of Clinical and Analytical Biochemistry, Graduate School of Pharmaceutical Sciences, Chiba University, Chiba 260-8675, Japan;5. Faculty of Pharmacy, Chiba Institute of Science, Choshi 288-0025, Japan;6. Amine Pharma Research Institute, Chiba 260-0856, Japan
Abstract:
Keywords:DFT, density functional theory   MD, molecular dynamics   MM, molecular modeling   SPD, spermidine
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