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Gene expression data classification using consensus independent component analysis
Authors:Zheng Chun-Hou  Huang De-Shuang  Kong Xiang-Zhen  Zhao Xing-Ming
Affiliation:[1]College of Information and Communication Technology, Qufu Normal University, Rizhao 276826, China [2]Intelligent Computing Lab, Institute of Intelligent Machines, Chinese Academy of Sciences, Hefei 230031,China
Abstract:We propose a new, method for tumor classification from gene expression data, which mainly contains three steps. Firstly, the original DNA microarray gene expression data are modeled by independent component analysis (ICA). Secondly, the most discriminant eigenassays extracted by ICA are selected by the sequential floating forward selection technique. Finally, support vector machine is used to classify the modeling data. To show the validity of the proposed method, we applied it to classify three DNA microarray datasets involving various human normal and tumor tissue samples. The experimental results show that the method is efficient and feasible.
Keywords:independent component analysis  feature selection  support vector machine  gene expression data
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