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Efficient mutation identification in zebrafish by microarray capturing and next generation sequencing
Authors:Bontems Franck  Baerlocher Loic  Mehenni Sabrina  Bahechar Ilham  Farinelli Laurent  Dosch Roland
Institution:aDepartment of Zoology and Animal Biology, University of Geneva, Switzerland;bFASTERIS SA, Geneva, Switzerland;cAbt. Entwicklungsbiochemie, Georg-August-Universität Göttingen, Germany
Abstract:Fish models like medaka, stickleback or zebrafish provide a valuable resource to study vertebrate genes. However, finding genetic variants e.g. mutations in the genome is still arduous. Here we used a combination of microarray capturing and next generation sequencing to identify the affected gene in the mozartkugelp11cv (mzlp11cv) mutant zebrafish. We discovered a 31-bp deletion in macf1 demonstrating the potential of this technique to efficiently isolate mutations in a vertebrate genome.
Keywords:Zebrafish  Maternal effect mutation  Embryonic polarity  Embryogenesis  Genomics  Microarray capturing  Next generation sequencing  Microtubule actin crosslinking factor 1 (macf1)
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