Ecological Characterisation of the Colonic Microbiota in Arctic and Sub-Arctic Seals

Dominant colonic bacteria in wild hooded (n = 9), harbour (n = 1) and grey (n = 1) seals were identified using 16S rRNA gene clone libraries (313 clones), revealing 52.7% Bacteroidetes, 41.5% Firmicutes, 4.5% Proteobacteria and 1.0% Fusobacteria. Thirty (77%) of the 39 phylotypes identified were novel, showing <97% sequence similarity to their nearest cultivated relatives. Mean colonic bacterial cell density, determined by real-time PCR, was high (12.8 log₁₀ cells/g wet wt) for the hooded seals, while the number of methanogenic Archea was low (4.0 log₁₀ cells/g wet wt). The level of ampicillin (amp^r) and tetracycline-resistant (tet^r) isolates was investigated by cultivation. Aerobic amp^r isolates were only detected in colon contents from four hooded seals, whereas aerobic tet^r isolates were found in seven of the nine hooded seals. These data provide novel insight to the gut microbiota of Arctic and sub-Arctic seals living in the wild.