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Selection and Identification of Aptamers Against B Cell Activating Factor
Authors:GUO Na-Yan  CHEN Wen-Biao  CHEN Yin-Nan  CHEN Rong-Sheng  LIN Jun-Sheng
Abstract:Systemic lupus erythematosus (SLE) is the most common autoimmune disease in China. B cell activating factor (BAFF) is an important target for the treatment and detection of SLE. It is of great significance to develop novel molecular recognition elements with high affinity for BAFF. In this study, artificial nucleic acid aptamers against BAFF were screened from a 78 nt single-stranded DNA random library by systematic evolution of ligands exponential enrichment (SELEX) in vitro based on several selection and amplification steps. Through ten rounds of selection, the aptamers with high specificity and affinity for BAFF were identified. After high-throughput sequencing, several aptamers were selected and further examined for binding affinity and specificity. The investigation by dot blotting, Eastern blotting analyses and enzyme-linked oligonucleotide assay (ELONA) showed that the aptamers Apt 7 and Apt 12 with dissociation constants of 241.00±19.75 nmol/L and 413.51±46.94 nmol/L were able to recognize BAFF specifically. After molecular docking analysis, Apt 7 was truncated to Apt 7~1, and the dissociation constant was 192.10±28.61 nmol/L. A sandwich ELONA using Apt 7~1 and BAFF antibodies was established to detect BAFF. The detection limit was estimated to be 0.227 nmol/L. This study provides new molecular recognition elements for the detection of BAFF and the study of antagonists.
Keywords:B cell activating factor (BAFF)  aptamer  high-throughput sequencing  systematic evolution of ligands exponential enrichment (SELEX)  
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