Proton magnetic resonance studies of the conformational changes of dideoxynucleoside ethyl phosphotriesters

PMR investigations on the diastereomeric phosphate methyl protons of the dinucleoside ethyl phosphotriesters Tp(C₂H₅)T, dA, and dIp(C₂H₅)dI have been used to study the conformational changes of these dimersin solution. In D₂O (273°K), the diastereomeric phosphate-methly groups of Tp(C₂H₅)T appear as a triplet. The methyl resonances of dIp(C₂H₅)dI and dAp(C₂H₅)dA appear as two sets of triplets and their chemical shift differences (δ₁ ? δ₂), decrease with increasing temperature, finally becoming zero at 292°K and 333°K, respectively. The same phenomenon is observed for dAp(C₂H₅)dA in CD₃OD; in this detacking solvent, the difference (δ₁ ? δ₂) diminishes to zero at a lower temperature (261°K). At room temperature in D₂O, the chemical shift of the phosphate methyl of Tp(C₂H₅)T appears at lower field than those of dIp(C₂H₅)dI or dAp(C₂H₅)dA. The differences between the chemical shifts of these groups (δ_I ? δ_T or δ_A ? δ_T) increase with increasing temperature, and reach maximal values at 301°K and 333°K, respectively. The results suggest that at low temperature the largest fraction of the dimer population exists in a stacked state, with the phosphate-ethyl groups outside the stack. Increasing temperature causes an oscillation of the bases and a shift in the dimer population away from the stacked state. Finally at high temperature, the planar bases rorate with respect to one another and in the case of dIp(C₂H₅)dI and dAp(C₂H₅)dA, the ethyl groups experience shielding by the anisotropic ring current of the five-membered ring of the bases. Thus, the current pmr studies and those reported earlier from our laboratory support an “oscillation-rotation model” for the unstacking process of the dimers. The relationship of this model and the “two-state model” is discussed.