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An efficient ligation method in the making of an in vitro virus for in vitro protein evolution
Authors:Ichiro Tabuchi  Sayaka Soramoto  Miho Suzuki  Koichi Nishigaki  Naoto Nemoto  Yuzuru Husimi
Institution:(1) Department of Functional Materials Science, Saitama University, 255 Shimo-okubo, 338-8570 Saitama, Japan;(2) GenCom Co., 11 Minami-Oya, 194-8511 Machida, Japan;(3) Present address: Tokyo Evolution Research Center, 1-1-45-504, Okubo, Shinjuku-ku, 169-0072 Tokyo, Japan
Abstract:The “in vitro virus” is a molecular construct to perform evolutionary protein engineering. The “virion(=viral particle)”(mRNA-peptide fusion), is made by bonding a nascent protein with its coding mRNA via puromycin in a test tube for in vitro translation. In this work, the puromycin-linker was attached to mRNA using the Y-ligation, which was a method of two single-strands ligation at the end of a double-stranded stem to make a stem-loop structure. This reaction gave a yield of about 95%. We compared the Y-ligation with two other ligation reactions and showed that the Y-ligation gave the best productivity. An efficient amplification of the in vitro virus with this “viral genome” was demonstrated. Published: October 28, 2002
Keywords:Indexing terms" target="_blank">Indexing terms  ligation method  evolutionary protein engineering            in vitro selection  mRNA-protein fusion  mRNA display
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