QST–FST comparisons with unbalanced half‐sib designs |
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Authors: | Kimberly J. Gilbert Michael C. Whitlock |
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Affiliation: | Department of Zoology, University of British Columbia, Vancouver, BC, Canada |
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Abstract: | QST, a measure of quantitative genetic differentiation among populations, is an index that can suggest local adaptation if QST for a trait is sufficiently larger than the mean FST of neutral genetic markers. A previous method by Whitlock and Guillaume derived a simulation resampling approach to statistically test for a difference between QST and FST, but that method is limited to balanced data sets with offspring related as half‐sibs through shared fathers. We extend this approach (i) to allow for a model more suitable for some plant populations or breeding designs in which offspring are related through mothers (assuming independent fathers for each offspring; half‐sibs by dam); and (ii) by explicitly allowing for unbalanced data sets. The resulting approach is made available through the R package QstFstComp. |
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Keywords: |
F
ST
half‐sib local adaptation outliers
Q
ST
unbalanced design |
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