SNUFER: A software for localization and presentation of single nucleotide polymorphisms using a Clustal multiple sequence alignment output file |
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Authors: | Marco A B Mansur Giovana P Cardozo Elaine V Santos Mozart Marins |
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Affiliation: | 1.Unidade de Biotecnologia, UNAERP, Ribeirão Preto, SP, Brazil;2.Heranza - Biotecnogia, Ribeirão Preto, SP, Brazil |
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Abstract: | SNUFER is a software for the automatic localization and generation of tables used for the presentation of single nucleotide polymorphisms (SNPs). After input of a fasta file containing the sequences to be analyzed, a multiple sequence alignment is generated using ClustalW ran inside SNUFER. The ClustalW output file is then used to generate a table which displays the SNPs detected in the aligned sequences and their degree of similarity. This table can be exported to Microsoft Word, Microsoft Excel or as a single text file, permitting further editing for publication. The software was written using Delphi 7 for programming and FireBird 2.0 for sequence database management. It is freely available for noncommercial use and can be downloaded from http://www.heranza.com.br/bioinformatica2.htm. |
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Keywords: | software single nucleotide polymorphisms multiple sequence alignment ClustalW |
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