SNPP: automating large-scale SNP genotype data management |
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| Authors: | Zhao Lan-Juan Li Miao-Xin Guo Yan-Fang Xu Fu-Hua Li Jin-Long Deng Hong-Wen |
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| Affiliation: | Laboratory of Molecular and Statistical Genetics, College of Life Sciences, Hunan Normal University Changsha, Hunan 410081, China. |
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| Abstract: | To manage high-throughput single nucleotide polymorphism (SNP) genotyping data efficiently, we developed a dynamic general database management system-SNPP (SNP Processor). It provides several functions, including data importing with comparison, Mendelian inheritance check within pedigrees, data compiling and exporting. Furthermore, SNPP may generate files for repeat genotyping and transform them into files that can be executed by a liquid handling system. AVAILABILITY: http://orclinux.creighton.edu/snpp/ CONTACT: lanjuanzhao@creighton.edu |
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