Quantitative trait loci,genes, and polymorphisms that regulate bone mineral density in mouse |
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| Authors: | Qing Xiong Yan Jiao Karen A. Hasty S. Terry Canale John M. Stuart Wesley G. Beamer Hong-Wen Deng David Baylink Weikuan Gu |
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| Affiliation: | 1. Department of Orthopaedic Surgery — Campbell Clinic and Pathology, University of Tennessee Health Science Center, Memphis, TN 38163, USA;2. Department of Medicine, University of Tennessee Health Science Center, Memphis, TN 38163, USA;3. The Jackson Laboratory, Bar Harbor, ME 04609, USA;4. Department of Computer Science and Technology, Southwest University, Chongqing 400715, PR China;5. Departments of Orthopedic Surgery and Basic Medical Sciences, University of Missouri — Kansas City, Kansas City, MO 64110, USA;6. Department of Medicine, Loma Linda University, Loma Linda, CA 92350, USA |
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| Abstract: | This is an in silico analysis of data available from genome-wide scans. Through analysis of QTL, genes and polymorphisms that regulate BMD, we identified 82 BMD QTL, 191 BMD-associated (BMDA) genes, and 83 genes containing known BMD-associated polymorphisms (BMDAP). The catalogue of all BMDA/BMDAP genes and relevant literatures are provided. In total, there are substantially more BMDA/BMDAP genes in regions of the genome where QTL have been identified than in non-QTL regions. Among 191 BMDA genes and 83 BMDAP genes, 133 and 58 are localized in QTL regions, respectively. The difference was still noticeable for the chromosome distribution of these genes between QTL and non-QTL regions. These results have allowed us to generate an integrative profile of QTL, genes, polymorphisms that determine BMD. These data could facilitate more rapid and comprehensive identification of causal genes underlying the determination of BMD in mouse and provide new insights into how BMD is regulated in humans. |
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