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Plant genomics in Africa: present and prospects
Authors:Hassan Ghazal  Yagoub Adam  Abdellah Idrissi Azami  Sofia Sehli  Hannah N. Nyarko  Bouchra Chaouni  Grace Olasehinde  Itunuoluwa Isewon  Marion Adebiyi  Olayinka Ajani  Enock Matovu  Olawole Obembe  Yvonne Ajamma  Gaston Kuzamunu  Samson Pandam Salifu  Jonathan Kayondo  Alia Benkahla  Ezekiel Adebiyi
Affiliation:1. National Center for Scientific and Technical Research, Rabat, Morocco

Mohammed VI University of Health Sciences, Casablanca, Morocco;2. Covenant University Bioinformatics Research (CUBRe), Covenant University, Ogun State, Km 10 Idiroko Road, P.M.B. 1023, Nigeria;3. Mohammed VI University of Health Sciences, Casablanca, Morocco;4. Department of Biochemistry and Biotechnology, Kwame Nkrumah University of Science and Technology (KNUST), Kumasi, Ghana;5. Laboratory of Plant and Microbial Biotechnology, Biodiversity and Environment, Faculty of Sciences, University Mohammed V, Rabat, Morocco;6. Covenant University Bioinformatics Research (CUBRe), Covenant University, Ogun State, Km 10 Idiroko Road, P.M.B. 1023, Nigeria

Department of Biological Sciences, Covenant University, Ogun State, Km 10 Idiroko Road, P.M.B. 1023, Ota, Nigeria;7. Covenant University Bioinformatics Research (CUBRe), Covenant University, Ogun State, Km 10 Idiroko Road, P.M.B. 1023, Nigeria

Department of Computer and Information Sciences, Covenant University, Ogun State, Km 10 Idiroko Road, P.M.B. 1023, Ota, Nigeria;8. Covenant University Bioinformatics Research (CUBRe), Covenant University, Ogun State, Km 10 Idiroko Road, P.M.B. 1023, Nigeria

Department of Computer Science, Landmark University, Kwara-State, Omu-Aran, Nigeria;9. Covenant University Bioinformatics Research (CUBRe), Covenant University, Ogun State, Km 10 Idiroko Road, P.M.B. 1023, Nigeria

Department of Chemistry, Covenant University, Ogun State, Km 10 Idiroko Road, P.M.B. 1023, Ota, Nigeria;10. College of Veterinary Medicine, Animal Resources and Biosecurity, Makerere University, P. O. Box 7062, Kampala, Uganda;11. African Institute for Mathematical Sciences, Cape Town, 7945 South Africa

Department of Pathology, Division of Human Genetics, University of Cape Town, IDM, Cape Town, South Africa

Department of Integrative Biomedical Sciences, Computational Biology Division, University of Cape Town, Observatory, 7925 South Africa;12. Uganda Virus Research Institute (UVRI), Uganda Research Unit on AIDS, Entebbe, Uganda;13. Bioinformatics and Biostatistics Laboratory (LR16IPT09), Pasteur Institute of Tunis, Tunis, Tunisia

Abstract:Plants are the world’s most consumed goods. They are of high economic value and bring many health benefits. In most countries in Africa, the supply and quality of food will rise to meet the growing population’s increasing demand. Genomics and other biotechnology tools offer the opportunity to improve subsistence crops and medicinal herbs in the continent. Significant advances have been made in plant genomics, which have enhanced our knowledge of the molecular processes underlying both plant quality and yield. The sequencing of complex genomes of African plant species, facilitated by the continuously evolving next-generation sequencing technologies and advanced bioinformatics approaches, has provided new opportunities for crop improvement. This review summarizes the achievements of genome sequencing projects of endemic African plants in the last two decades. We also present perspectives and challenges for future plant genomic studies that will accelerate important plant breeding programs for African communities. These challenges include a lack of basic facilities, a lack of sequencing and bioinformatics facilities, and a lack of skills to design genomics studies. However, it is imperative to state that African countries have become key players in the plant genome revolution and genome derived-biotechnology. Therefore, African governments should invest in public plant genomics research and applications, establish bioinformatics platforms and training programs, and stimulate university and industry partnerships to fully deploy plant genomics, particularly in the fields of agriculture and medicine.
Keywords:plant genomics  Africa  bioinformatics  biodiversity  crop improvement  medicinal plant
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