Evaluation of Factors Restricting Distribution of the Endangered Key Largo Woodrat

ABSTRACT We examined a suite of models in an information theoretic framework to identify factors restricting presence of the endangered Key Largo woodrat (Neotoma floridana smalli) throughout its remaining habitat. Models containing variables related to availability of nest sites and mammalian predator abundances were supported by our data. Abundance of natural (large overstory trees) and artificial (rock and debris piles) nest substrate were the most important predictor variables, followed by indices of feral cat and raccoon (Procyon lotor) abundance. We recommend increasing abundance of nest substrate in the short term through addition of artificial nest substrate and in the long term through continued protection of remaining forest habitat.     

A 40,000-year woodrat-midden record of vegetational and biogeographical dynamics in north-eastern Utah, USA

Aim A conspicuous climatic and biogeographical transition occurs at 40–45° N in western North America. This pivot point marks a north–south opposition of wet and dry conditions at interannual and decadal time‐scales, as well as the northern and southern limits of many dominant western plant species. Palaeoecologists have yet to focus on past climatic and biotic shifts along this transition, in part because it requires comparisons across dissimilar records [i.e. pollen from lacustrine sediments to the north and plant macrofossils from woodrat (Neotoma) middens to the south]. To overcome these limitations, we are extending the woodrat‐midden record northward into the lowlands of the central Rocky Mountains. Location Woodrat middens were collected from crevices and rock shelters on south‐facing slopes of Dutch John Mountain (2000–2200 m, 40°57′ N, 109°25′ W), situated on the eastern flanks of the Uinta Mountains in north‐eastern Utah. The site is near the regional limits for Pinus ponderosa, P. edulis, P. contorta, Cercocarpus ledifolius var. intricatus, Abies concolor, Ephedra viridis and other important western species. Methods We analysed pollen and plant macrofossils from the 40,000‐year midden sequence. The middens represent brief, depositional episodes (mostly years to decades). Four middens represent the early to full‐glacial period (40,000–18,000 cal‐yr bp ), eight middens are from the late‐glacial/early Holocene transition (13,500–9000 cal yr bp ), and 33 middens span the mid‐to‐late Holocene (last 7500 years). Temporal density of our Holocene middens (one every c. 210 years) is comparable with typical Holocene pollen sequences from lake sediments. Results Early to full‐glacial assemblages are characterized by low diversity and occurrence of montane conifers (Picea pungens, Pseudotsuga menziesii, P. flexilis, Juniperus communis) absent from the site today. Diversity increases in the late‐glacial samples with the addition of J. scopulorum, J. horizontalis, C. montanus, C. ledifolius var. intricatus and mesic understory species. The coniferous trees and J. communis declined and J. osteosperma appeared during the late‐glacial/Holocene transition. Juniperus osteosperma populations have occupied the site throughout the Holocene. Pinus ponderosa was established by 7500 cal‐yr bp , and has occurred at least locally ever since. Montane conifers and J. horizontalis persisted until c. 5500 cal‐yr bp . The signature events of the late Holocene were the invasions of P. edulis and Ephedra viridis and establishment of pinyon–juniper woodland in the last 800 years. Main conclusions The Dutch John Mountain midden record adds to an emerging picture in which mid‐elevation conifers (P. flexilis, Pseudotsuga menziesii, Picea pungens, J. scopulorum, J. communis) dominated vegetation over a wide area of the Colorado Plateau and adjacent Rocky Mountains. Rather than being fragmented, as often assumed in phylogeographical studies, these species had broader and more‐connected distributions than they do in the region today. Paradoxically, subalpine conifers (Picea engelmannii, A. lasiocarpa) occurred at higher elevations to the south, possibly representing declining precipitation from south to north owing to southward displacement of the polar jet stream. The Dutch John Mountain record displays a series of extinction and invasion events. Most of the extinctions were local in scale; nearly all constituents of fossil midden assemblages occur within a few kilometres of Dutch John Mountain, and some occur at least locally on its slopes. The sole exception is J. horizontalis, which is regionally extinct. In contrast to extinctions, Holocene invasions were regional in scale; J. osteosperma, P. ponderosa, P. edulis and Ephedra viridis immigrated from glacial‐age source populations far to the south.     

Strategies in herbivory by mammals revisited: The role of liver metabolism in a juniper specialist (Neotoma stephensi) and a generalist (Neotoma albigula)

Although herbivory is widespread among mammals, few species have adopted a strategy of dietary specialization. Feeding on a single plant species often exposes herbivores to high doses of plant secondary metabolites (PSMs), which may exceed the animal's detoxification capacities. Theory predicts that specialists will have unique detoxification mechanisms to process high levels of dietary toxins. To evaluate this hypothesis, we compared liver microsomal metabolism of a juniper specialist, Neotoma stephensi (diet >85% juniper), to a generalist, N. albigula (diet ≤30% juniper). Specifically, we quantified the concentration of a key detoxification enzyme, cytochrome P450 2B (CYP2B) in liver microsomes, and the metabolism of α‐pinene, the most abundant terpene in the juniper species consumed by the specialist woodrat. In both species, a 30% juniper diet increased the total CYP2B concentration (2–3×) in microsomes and microsomal α‐pinene metabolism rates (4‐fold). In N. stephensi, higher levels of dietary juniper (60% and 100%) further induced CYP2B and increased metabolism rates of α‐pinene. Although no species‐specific differences in metabolism rates were observed at 30% dietary juniper, total microsomal CYP2B concentration was 1.7× higher in N. stephensi than in N. albigula (p < .01), suggesting N. stephensi produces one or more variant of CYP2B that is less efficient at processing α‐pinene. In N. stephensi, the rates of α‐pinene metabolism increased with dietary juniper and were positively correlated with CYP2B concentration. The ability of N. stephensi to elevate CYP2B concentration and rate of α‐pinene metabolism with increasing levels of juniper in the diet may facilitate juniper specialization in this species.     

Chukar Seasonal Survival and Probable Causes of Mortality

ABSTRACT Chukars (Alectoris chukar) have been introduced throughout the world. Despite this widespread distribution, limited information regarding seasonal survival, probable causes of mortality, and other basic life history characteristics is available to manage this harvested species. We estimated the probable cause of mortality for chukars with radiotransmitters by examining evidence at kill sites. We used model selection to evaluate influences of seasonal effects (fall raptor migration, peak migration, and reproductive period), demographic effects (age and sex), radio weight, and year on survival of chukars in western Utah, USA, by using a known-fate model in Program MARK and 2 years of telemetry data. We captured and randomly fitted 125 individual chukars with 2 different-sized radiotransmitters (97 F, 20 M, 8 sex undetermined). Model selection results showed our top 3 models accounted for 99% of Akaike's Information Criterion weight, and each one had seasonal and year effects. Two-week survival estimates were lower during peak raptor migration in both years and significantly (P < 0.05) so in year 2 (2-week S = 0.87, 95% CI = 0.77–0.94) compared with other year 2 intervals (2-week S > 0.91). Annual survival was lower in 2005 (S = 0.03, 95% CI = 0.01–0.09) compared with 2006 (S = 0.19, 95% CI = 0.12–0.31). We documented 95 deaths and classified 56% unknown, 33% avian predation, 8% hunter harvest, and 3% mammalian predation. Our research suggests that predation on chukars is substantial during the peak fall raptor migratory period and that the hunting take under current regulations is relatively small and likely compensatory.     

Field Use of Isoflurane for Safe Squirrel and Woodrat Anesthesia

Abstract: We evaluated a chamber and nose cone method of isoflurane delivery for anesthetizing eastern gray squirrels (Sciurus carolinensis; summer n = 43, winter n = 48) and Allegheny woodrats (Neotoma magister; summer n = 24, winter n = 13) for use when pain or stress was possible from sampling procedures. Mean induction time for squirrels (from beginning of isoflurane administration to safe removal from trap), was 4.63 ± 0.58 minutes. Squirrels awoke more quickly in summer (1.40 ± 0.15 min) than in winter (3.62 ± 0.24 min) after removal of the nose cone. We manually restrained woodrats and administered the nose cone for 0.5 minutes to each animal. Woodrats awoke after 4.76 ± 0.58 minutes following the final dose of isoflurane for both seasons. These methods are useful for working with small mammals in the field and provide an appropriate anesthetic when there may be more than slight pain or distress.     

Reproductive success and effective population size in woodrats (Neotoma macrotis)

Discrepancies between the census size and the genetically effective size of populations (N(e)) can be caused by a number of behavioural and demographic factors operating within populations. Specifically, strong skew in male reproductive success, as would be expected in a polygynous mating system, could cause a substantial decrease in N(e) relative to census size. Because the mating system of Neotoma macrotis had previously been described as one nearing harem polygyny, I examined the distribution of reproductive success and genetic variation within a population of this species. Combining genetic data and three years of field observations, I show that variance in reproductive success does not deviate from poisson expectations within either sex and variance in success is similar between the sexes. Furthermore, both males and females had multiple partners across litters in addition to some evidence of multiple paternity within litters. Despite a lack of strong skew in reproductive success, an estimate of N(e) based on a number of demographic parameters suggests that the ratio of N(e)/N in this population is 0.48. Although the ratio of N(e)/N suggests that the population is experiencing higher rates of genetic drift than would be expected based on census size alone, the population maintains high levels of genetic diversity. Estimates of neighbourhood size and patterns of recruitment to the study site suggest that immigration plays an important role in this population and may contribute to the maintenance of high levels of genetic diversity.     

The gut microbiome reflects ancestry despite dietary shifts across a hybrid zone

The microbiome is critical to an organism's phenotype, and its composition is shaped by, and a driver of, eco-evolutionary interactions. We investigated how host ancestry, habitat and diet shape gut microbial composition in a mammalian hybrid zone between Neotoma lepida and N. bryanti that occurs across an ecotone between distinct vegetation communities. We found that habitat is the primary determinant of diet, while host genotype is the primary determinant of the gut microbiome—a finding further supported by intermediate microbiome composition in first-generation hybrids. Despite these distinct primary drivers, microbial richness was correlated with diet richness, and individuals that maintained higher dietary richness had greater gut microbial community stability. Both relationships were stronger in the relative dietary generalist of the two parental species. Our findings show that host ancestry interacts with dietary habits to shape the microbiome, ultimately resulting in the phenotypic plasticity that host–microbial interactions allow.     

Transferring Research to Endangered Species Management

ABSTRACT In the natural resource and wildlife profession, we face difficulties in the production, diffusion, and transfer of rigorously tested science, especially when facing entrenched management paradigms. We present 3 case studies to illustrate the challenges in changing entrenched management paradigms for endangered species. Here we examine specifically what factors helped or hindered the adoption of management practices through the theoretical framework developed for the dissemination of technologies. An examination of 3 case studies suggests that active communication and advocacy of scientific findings, along with simple, visible results, will aid researchers in the acceptance and adoption of their research. Management agencies that increase openness and communication with outside experts, reduce bureaucratic procedures, and localize decision making increase the likelihood that new scientific ideas will be adopted by the agency. We also suggest adaptive resource management as a strategy for endangered species management may foster many of the characteristics that aid in the adoption of scientific ideas into management activities.