The lifetime of molecular (Davydov) solitons

The lifetime of Davydov solitons in a one-dimensional system is studied theoretically. The process of thermalization and the properties of solitons at finite temperature are investigated and the processes of soliton creation and disintegration are discussed.     

The design of single-stranded nucleic acid knots

A general strategy is described for the synthesis of single-stranded nucleic acid knots. Control of nucleic acid sequence is used to direct the formation of secondary structures that produce the target topology. The key feature of the strategy is the equation of a half-turn of double helical DNA or RNA with a node in a knot. By forming nodes from complementary DNA sequences, it appears possible to direct the assembly of any simple knot. Stabilization of individual nodes may be achieved by constructing them from long regions containing both B-DNA and Z-DNA. Control over the braiding of DNA that acts as a link between node-forming domains can be realized by condensing the nodes into well-defined DNA structures, such as extended domains of linear duplex, branched junctions, antijunctions or mesojunctions. Further topological control may be derived from the pairing of linker regions to complementary single-stranded molecules, thereby preventing them from braiding in an undesirable fashion.     

小鼠对不同拓扑性质图形的识别

视觉感知的一系列研究都支持大范围拓扑感知的理论．拓扑性质作为整体性质,是视觉感知的基础．视觉对图形拓扑特征差异的感知要优先于对局部特征差异的感知．采用Y迷宫研究了小鼠对不同拓扑性质图形的识别．训练小鼠学习识别圆环和实心矩形这一对拓扑性质不同的图形,之后用拓扑特征相同或不同的其他图形测试小鼠,这些图形包括空心矩形、实心圆、缺口的圆环、缺口的空心矩形．实验结果表明,学会识别圆环(奖励)和实心矩形(无奖励)的小鼠无法区分实心圆和实心矩形以及圆环和空心矩形,但是能够分别从缺口圆环、缺口的空心矩形、实心圆与空心矩形组成的图形对中识别出空心矩形．因此证实了小鼠的视觉系统能够感知拓扑特征的差异并且具有对拓扑性质的概括能力．结果为拓扑知觉对视觉系统来说是基本的这一假设提供了证据．     

生态工业园共生网络的脆弱性

工业生态系统的稳定可持续运行是生态工业园区实现环境效益、经济效益和社会效益的重要保障,对生态工业共生网络脆弱性分析是工业生态学领域值得探讨的重要问题。运用复杂网络理论,从网络拓扑结构出发,论证该工业园具有小世界性和无标度性,为网络脆弱性分析奠定基础;通过攻击负载最大节点,利用网络效率和最大连通子图对网络的脆弱性进行分析,从而衡量节点失效对整个网络造成的破坏性。指出复杂网络在生态工业园共生网络中进一步研究的方向。     

“大范围优先”对象形成的神经关联：前颞叶

知觉对象是什么？这事看起来很简单,却是认知科学许多领域中最核心的问题,日前为止还没有公认的解答。“大范围优先”的拓扑学方法把知觉对象的定义严格地联系到拓扑变换下的不变量。知觉对象的直观概念—形状改变时其整体一致性得以保持一可以精确地被拓扑不变量,如连接组分和洞,所刻画。知觉对象的拓扑学定义已经被大量的行为学实验所验证。这些实验一致表明,虽然对象的一致性能够在非拓扑变换下得以保持,却会被拓扑变换所破坏,从而一个新的对象被感知到。特别是进一步的功能磁共振成像实验揭示,前颞页区参与拓扑知觉和知觉对象的形成,而这一脑区本来是形式视觉通路的终点。行为学上“大范围优先”的结果与视觉通路神经解剖学结果的悖逆,提示我们应该注意对象表征形成的问题和更广泛的意义上,知觉到底在何处发生的基本问题。     

Recent advances in TMEM16A: Structure,function, and disease

TMEM16A (also known as anoctamin 1, ANO1) is the molecular basis of the calcium-activated chloride channels, with ten transmembrane segments. Recently, atomic structures of the transmembrane domains of mouse TMEM16A (mTMEM16A) were determined by single-particle electron cryomicroscopy. This gives us a solid ground to discuss the electrophysiological properties and functions of TMEM16A. TMEM16A is reported to be dually regulated by Ca²⁺ and voltage. In addition, the dysfunction of TMEM16A has been found to be involved in many diseases including cystic fibrosis, various cancers, hypertension, and gastrointestinal motility disorders. TMEM16A is overexpressed in many cancers, including gastrointestinal stromal tumors, gastric cancer, head and neck squamous cell carcinoma (HNSCC), colon cancer, pancreatic ductal adenocarcinoma, and esophageal cancer. Furthermore, overexpression of TMEM16A is related to the occurrence, proliferation, and migration of tumor cells. To date, several studies have shown that many natural compounds and synthetic compounds have regulatory effects on TMEM16A. These small molecule compounds might be novel drugs for the treatment of diseases caused by TMEM16A dysfunction in the future. In addition, recent studies have shown that TMEM16A plays different roles in different diseases through different signal transduction pathways. This review discusses the topology, electrophysiological properties, modulators and functions of TMEM16A in mediates nociception, gastrointestinal dysfunction, hypertension, and cancer and focuses on multiple regulatory mechanisms regarding TMEM16A.     

Topological analysis of the fusion process between cellular and subcellular compartments

The study presents an application of the theory of homeomorphic transformations of topological manifolds and the operation of the connected sum of manifolds for topological analysis of membrane transformations during the fusion process between cellular and subcellular compartments. The biological cell and the subcellular structures in the form of vesicles are modelled by an arrangement of two concentric spheres corresponding to the inner and outer layer of the membrane bounding the vesicles. The analysis shows eight succeeding topological stages of membrane transformations during the fusion process and these stages are characterized. It is concluded that there is a vectorial translocation of lipid molecules from the outer layers of the membranes before the fusion process to the internal layer of the membrane bounding the vesicle after the fusion process and there is no lipid translocation in the reverse direction.     

用脑光学成像术研究不同空间拓扑位置猫初级视皮层的空间频率反应特性

采用基于内源信号的脑光学成像方法,在大范围视皮层研究了不同空间拓扑位置对应的皮层区的对光栅刺激空间频率反应特性。结果表明,周边视野对应区对高空间频率刺激反应极弱或没有反应,中心视野对应区对较宽的空间频率范围内的刺激均有反应,但对高频刺激反应更强;无论在周边对应区还是中心对应区,其视野越靠近中心,其空间频率调谐曲线和截止空间频率越靠近高频,而且这种过渡是平缓的。以上结果说明,猫初级视皮层空间频率反应     

Topological model of the division process of cellular and subcellular compartments

The application of the theory of homeomorphic transformations of topological manifolds and the operation of the connected sum of manifolds for a formation of a topological model of membrane transformations during the division process of cellular and subcellular compartments, has been shown. The biological cell and the subcellular structures in the form of vesicles are modelled by an arrangement of two concentric spheres corresponding to the inner and outer layer of the membrane bounding the vesicle. The analysis shows eight succeeding topological stages of membrane transformations during the division process and these stages are characterised. It is concluded that there is a vectorial translocation of lipid molecules from the inner layer of the membrane bounding the vesicle before the division process to the outer layer of the membranes after the division process and there is no lipid translocation from the outer layer to the inner layers during the division process.