The response of stream macroinvertebrates to substrate size and heterogeneity

Manipulations of substrate size and components of heterogeneity were designed to test their independent effects and interactions on the abundance and species richness of stream macroinvertebrates. Two components of substrate heterogeneity, variation in size class proportions and number of size classes, had no independent effect on abundance or richness; and in general did not interact with median particle size. Median particle size, stream current, and detritus accounted for most of the significant variation in macroinvertebrates colonizing the experimental substrates. Rocks with high surface heterogeneity (roughness) were colonized by more individuals (but not taxa) than rocks with low surface heterogeneity.     

Influence of root density on the critical soil water potential

Estimation of root water uptake in crops is important for making many other agricultural predictions. This estimation often involves two assumptions: (1) that a critical soil water potential exists which is constant for a given combination of soil and crop and which does not depend on root length density, and (2) that the local root water uptake at given soil water potential is proportional to root length density. Recent results of both mathematical modeling and computer tomography show that these assumptions may not be valid when the soil water potential is averaged over a volume of soil containing roots. We tested these assumptions for plants with distinctly different root systems. Root water uptake rates and the critical soil water potential values were determined in several adjacent soil layers for horse bean (Vicia faba) and oat (Avena sativa) grown in lysimeters, and for field-grown cotton (Gossypium L.), maize (Zea mays) and alfalfa (Medicago sativa L.) crops. Root water uptake was calculated from the water balance of each layer in lysimeters. Water uptake rate was proportional to root length density at high soil water potentials, for both horse bean and oat plants, but root water uptake did not depend on root density for horse bean at potentials lower than −25 kPa. We observed a linear dependency of a critical soil water potential on the logarithm of root length density for all plants studied. Soil texture modified the critical water potential values, but not the linearity of the relationship. B E Clothier Section editor     

Effect of soil acidity and saturating cation on adsorption of urea in soil

Summary Elevating the pH of two extremely acid tropical soils from an initial pH of 4 to 5 with Ca(OH)₂ and NaOH solutions resulted in a sharp decrease in urea adsorption. Further increases in pH to 9 caused only slight further decrease in urea adsorption. Ca treatment resulted in slightly higher adsorption than Na treatment over the full range of pH values studied for a clay soil with high smectite content, and for a loam with kaolinite mineralogy below pH 7. Above pH 7 a kaolinitic loamy soil gave slightly higher adsorption with Na treatment than with Ca.     

Survival of Pseudomonas fluorescens and Bacillus subtilis introduced into two soils of different texture in field microplots

Abstract Antibiotic-resistant strains of Pseudomonas fluorescens and Bacillus subtilis , produced by transposon Tn5 mutagenesis and transformation with plasmid pFT30, respectively, were characterized. Both strains grew at a rate comparable to that of the wild-type strains, and the antibiotic resistance remained stable for over 50 generations without selective pressure. During the growing season, the survival of these strains was studied in two soils of different texture cropped with wheat. The B. subtilis populations declined rapidly in both soils and then stabilized at the levels of added spores. P. fluorescens showed a slow, steady decline in both soils; survival was better in the finer-textured soil, a silt loam, than in the coarser loamy sand. For both bacteria, some translocation to deeper soil layers was observed. No significant rhizosphere effects were detected in either of the two soils.     

Effects of grazing on grassland soil carbon: a global review

Soils of grasslands represent a large potential reservoir for storing CO₂, but this potential likely depends on how grasslands are managed for large mammal grazing. Previous studies found both strong positive and negative grazing effects on soil organic carbon (SOC) but explanations for this variation are poorly developed. Expanding on previous reviews, we performed a multifactorial meta‐analysis of grazer effects on SOC density on 47 independent experimental contrasts from 17 studies. We explicitly tested hypotheses that grazer effects would shift from negative to positive with decreasing precipitation, increasing fineness of soil texture, transition from dominant grass species with C₃ to C₄ photosynthesis, and decreasing grazing intensity, after controlling for study duration and sampling depth. The six variables of soil texture, precipitation, grass type, grazing intensity, study duration, and sampling depth explained 85% of a large variation (±150 g m^?2 yr^?1) in grazing effects, and the best model included significant interactions between precipitation and soil texture (P = 0.002), grass type, and grazing intensity (P = 0.012), and study duration and soil sampling depth (P = 0.020). Specifically, an increase in mean annual precipitation of 600 mm resulted in a 24% decrease in grazer effect size on finer textured soils, while on sandy soils the same increase in precipitation produced a 22% increase in grazer effect on SOC. Increasing grazing intensity increased SOC by 6–7% on C₄‐dominated and C₄–C₃ mixed grasslands, but decreased SOC by an average 18% in C₃‐dominated grasslands. We discovered these patterns despite a lack of studies in natural, wildlife‐dominated ecosystems, and tropical grasslands. Our results, which suggest a future focus on why C₃ vs. C₄‐dominated grasslands differ so strongly in their response of SOC to grazing, show that grazer effects on SOC are highly context‐specific and imply that grazers in different regions might be managed differently to help mitigate greenhouse gas emissions.     

Predicting protein structural classes with pseudo amino acid composition: an approach using geometric moments of cellular automaton image

A novel approach was developed for predicting the structural classes of proteins based on their sequences. It was assumed that proteins belonging to the same structural class must bear some sort of similar texture on the images generated by the cellular automaton evolving rule [Wolfram, S., 1984. Cellular automation as models of complexity. Nature 311, 419-424]. Based on this, two geometric invariant moment factors derived from the image functions were used as the pseudo amino acid components [Chou, K.C., 2001. Prediction of protein cellular attributes using pseudo amino acid composition. Proteins: Struct., Funct., Genet. (Erratum: ibid., 2001, vol. 44, 60) 43, 246-255] to formulate the protein samples for statistical prediction. The success rates thus obtained on a previously constructed benchmark dataset are quite promising, implying that the cellular automaton image can help to reveal some inherent and subtle features deeply hidden in a pile of long and complicated amino acid sequences.     

Structure and composition of riparian forests with special reference to geomorphic site conditions along the Tokachi River,northern Japan

The structure and composition of riparian forests were examined along the Tokachi River, northern Japan. Both the hydrogeomorphic gradient and the temporal gradient were analyzed in attempt to explain the present pattern of riparian forests. The stability of floodplain surfaces was estimated on the basis of the elevation above the riverbed and the distance from the river channel. The characteristics of the substratum on which trees were established were also examined by excavation of buried sediment. The results indicated that soil moisture and organic content increased while the size of particles in the substratum decreased with increased elevation and distance from the river channel. Gradient analysis was employed to examine the distribution of dominant species, such as Alnus hirsuta, Toisusu urbaniana, Populus maximowiczii, Picea jezoensis and Abies sachalinensis. The relative dominance of each could be arrayed across the elevation gradient. Although the three broad-leaved pioneers dominated bars and floodplains near the river channel, their modes shifted from lower to higher elevation and amplitudes of distribution curves decreased in the following order: A. hirsuta, T. urbaniana, P. maximowiczii and conifers, which were located on the highest floodplains. Sites could be divided into three classes in terms of stability. There were fewer species at active sites, which favored the three pioneer species, but species richness and diversity increased with stand age. Semi-active and stable sites were more diverse with the establishment of conifers and other broad-leaved trees, which included upland species. However, species richness peaked and then decreased after trees reached 50 to 60 years of age. The growth of dwarf bamboo and the development of conifer-dominant stands impeded the establishment of other species, thereby reducing species richness and diversity in mature stands. Chronologically, floodplains could be differentiated into high- and low-frequency zones of flood disturbance, with pioneer species occupying the former, and late successional species found largely in the latter.     

The capacity of soils to preserve organic C and N by their association with clay and silt particles

Although it has been recognized that the adsorption of organics to clay and silt particles is an important determinant of the stability of organic matter in soils, no attempts have been made to quantify the amounts of C and N that can be preserved in this way in different soils. Our hypothesis is that the amounts of C and N that can be associated with clay and silt particles is limited. This study quantifies the relationships between soil texture and the maximum amounts of C and N that can be preserved in the soil by their association with clay and silt particles. To estimate the maximum amounts of C and N that can be associated with clay and silt particles we compared the amounts of clay- and silt-associated C and N in Dutch grassland soils with corresponding Dutch arable soils. Secondly, we compared the amounts of clay- and silt-associated C and N in the Dutch soils with clay and silt-associated C and N in uncultivated soils of temperate and tropical regions.We observed that although the Dutch arable soils contained less C and N than the corresponding grassland soils, the amounts of C and N associated with clay and silt particles was the same indicating that the amounts of C and N that can become associated with this fraction had reached a maximum. We also observed close positive relationships between the proportion of primary particles < 20 m in a soil and the amounts of C and N that were associated with this fraction in the top 10 cm of soils from both temperate and tropical regions. The observed relationships were assumed to estimate the capacity of a soil to preserve C and N by their association with clay and silt particles. The observed relationships did not seem to be affected by the dominant type of clay mineral. The only exception were Australian soils, which had on average more than two times lower amounts of C and N associated with clay and silt particles than other soils. This was probably due to the combination of low precipitation and high temperature leading to low inputs of organic C and N.The amount of C and N in the fraction > 20 m was not correlated with soil texture. Cultivation decreased the amount of C and N in the fraction > 20 m to a greater extent than in the fraction < 20 m, indicating that C and N associated with the fraction < 20 m is better protected against decomposition.The finding of a given soil having a maximum capacity to preserve organic C and N will improve our estimations of the amounts of C and N that can become stabilized in soils. It has important consequences for the contribution of different soils to serve as a sink or source for C and N in the long term.     

不同质地土壤对花生根系生长、分布和产量的影响

为了探究土壤类型与花生(Arachis hypogaea)根系生长及产量之间的关系, 采用箱栽的方法, 研究了不同质地土壤(砂土、壤土、黏土)对花生根系生长、分布和产量的影响。砂土和壤土中花生根系干物质重各时期均显著高于黏土中, 但生育后期黏土中花生根系干物质重比壤土和砂土下降相对较慢。从不同类型土壤质地根系分布及根系活力来看, 黏土根系主要分布在上层土壤, 但上层土壤根系活力后期下降慢; 砂土有利于花生根系向深层土壤生长, 但上层土壤根系活力后期下降快; 而壤土对花生根系生长和活力时空分布的影响介于黏土和砂土之间。砂土有利于花生荚果的膨大, 且花生荚果干物质积累早而快, 但后期荚果干物质重积累少; 壤土的花生荚果干物质积累中后期多, 黏土则在整个生育期均不利于花生荚果干物质积累。最终荚果产量、籽仁产量和有效果数均表现为壤土最大、砂土次之、黏土最小。研究表明通气性和保肥保水能力居中的壤土更适合花生的根系生长发育及产量的形成。     

连续免耕对不同质地稻田土壤理化性质的影响

以我国南方地区典型的单季水稻生产大田为研究对象,按土壤质地分为壤质和粘质两个系列,探讨不同质地稻田土壤理化性质变化对连续免耕的响应规律。结果表明,在无秸秆覆盖条件下,随着免耕年限的增加,壤质和粘质稻田土壤的耕层均有紧实度提高的趋势,特别是粘质土壤,导致耕层变浅。与常年翻耕土壤相比,免耕6a后壤质水稻土0—20 cm土层的紧实度值平均增加了32%,而粘质的平均增加了90%。在相同免耕年限条件下粘质稻田土壤容重的增加也比壤质土壤的明显。壤质土壤0—10 cm土层有机质和碱解氮含量随免耕年限延长而提高,而在粘质土壤则显著降低。无论是壤质还是粘质土壤,连续免耕多年后土壤速效磷均在耕层(0—20 cm)富集,而速效钾则相反。总体而言,壤质水稻土对免耕的适宜性要优于粘质土壤;应根据土壤质地的不同选择性地实施免耕技术,并结合秸秆覆盖,以实现免耕稻田土壤的可持续利用。