Intraspecific genetic variation of a Fagus sylvatica population in a temperate forest derived from airborne imaging spectroscopy time series

1. The growing pace of environmental change has increased the need for large‐scale monitoring of biodiversity. Declining intraspecific genetic variation is likely a critical factor in biodiversity loss, but is especially difficult to monitor: assessments of genetic variation are commonly based on measuring allele pools, which requires sampling of individuals and extensive sample processing, limiting spatial coverage. Alternatively, imaging spectroscopy data from remote platforms may hold the potential to reveal genetic structure of populations. In this study, we investigated how differences detected in an airborne imaging spectroscopy time series correspond to genetic variation within a population of Fagus sylvatica under natural conditions.
2. We used multi‐annual APEX (Airborne Prism Experiment) imaging spectrometer data from a temperate forest located in the Swiss midlands (Laegern, 47°28'N, 8°21'E), along with microsatellite data from F. sylvatica individuals collected at the site. We identified variation in foliar reflectance independent of annual and seasonal changes which we hypothesize is more likely to correspond to stable genetic differences. We established a direct connection between the spectroscopy and genetics data by using partial least squares (PLS) regression to predict the probability of belonging to a genetic cluster from spectral data.
3. We achieved the best genetic structure prediction by using derivatives of reflectance and a subset of wavebands rather than full‐analyzed spectra. Our model indicates that spectral regions related to leaf water content, phenols, pigments, and wax composition contribute most to the ability of this approach to predict genetic structure of F. sylvatica population in natural conditions.
4. This study advances the use of airborne imaging spectroscopy to assess tree genetic diversity at canopy level under natural conditions, which could overcome current spatiotemporal limitations on monitoring, understanding, and preventing genetic biodiversity loss imposed by requirements for extensive in situ sampling.

     

Stronger dung removal in forests compared with grassland is driven by trait composition and biomass of dung beetles

1. Ecosystem processes depend on the biomass of the involved organisms, but their functional diversity may play an additional role. In particular, the exclusion of key functional groups through habitat disturbance may lead to the breakdown of ecosystem functions. Dung removal is an important process contributing to nutrient cycling and thus productivity in grazed ecosystems. 2. This study investigated the role of different functional groups of dung beetles in dung removal in different habitats within a wood-pasture in two different seasons. An experimental setting with 12 blocks and 108 dung pads was used to investigate short-term dung removal over 1 week of exposure. 3. Dung removal was most strongly affected by habitat type, with almost 40% lower levels in grassland than in adjacent forest and forest gaps. Of all assemblage characteristics, total biomass of tunneller species was the strongest predictor of dung removal, whereas functional diversity showed no significant effect. In accordance with the dung removal pattern at habitat type level, densities of large tunnellers were suppressed in grassland compared with forest. 4. It is concluded that dung removal is habitat-specific and large tunnellers play a disproportionate role in this important ecosystem function in temperate forests.     

Embryos of common thresher shark Alopias vulpinus in southern Brazil, South Atlantic Ocean

Eight embryonic thresher sharks Alopias vulpinus (53·9–124 cm total length) were collected from two females caught by commercial longline off southern Brazil in September and November 2004. Morphometric measurements are provided.     

Environmental variables affecting the sexual segregation of great white sharks Carcharodon carcharias at the Neptune Islands South Australia

The seasonal temporal sexual segregation of white sharks Carcharodon carcharias , at the Neptune Islands, South Australia, is described in relation to environmental variables. A significant sexual segregation was found at this site with sex ratios strongly favouring males overall. Males were more prevalent than females in all months in a 3 year sampling period, aside from April and May. There was a significant difference between the sexes in terms of mean daily numbers over the months of the study. It was also observed that sexual segregation fluctuated for unknown reasons on a temporal scale. Predictive models for estimating male and female numbers based on a series of abiotic factors were generated. Sea surface temperature, tidal height, tidal range, moon phase, cloud cover, underwater visibility and swell height were related to daily sightings of male and female white sharks to determine the influence of these variables on sexual segregation. Visibility and sea surface temperature affected male numbers, however, visibility did not affect sexual segregation. Tidal height was significantly different between males and females. Sea surface temperature also appeared to be related to sexual segregation in this species. Females were present when temperatures ranged from 15·7 to 18·1° C whereas males were observed at temperatures ranging from 14·3 to 17·8° C, with a peak in sightings in September, when sea surface temperatures were at their lowest. Since parturition is thought to occur in spring or summer, it is suggested that females are absent at this time and only return during prime feeding periods or times at which temperatures are elevated in order to increase developmental growth rates of their young. The significantly lower temperatures in 2003 may explain the absence of females in this year. Hypotheses related to temperature regulation in this species are put forward to explain the sexual segregation observed.     

Pollination systems in a warm temperate evergreen broad-leaved forest on Yaku Island

Animal pollination in a warm temperate evergreen broad-leaved forest was observed on Yaku-shima Island, south of Kyushu, Japan. Three groups of plants were categorized: canopy-flowering tree species, understory-flowering tree species, and climber and epiphyte species. Each of these formed different pollination systems. The canopy-flowering tree species had shallow, dish-shaped flowers and utilized various types of opportunistic pollinators. Most of the climber and epiphyte species had deep, tube-shaped flowers and specialized pollinators, although some climber species which bloomed in the canopy especially in winter, had opportunistic pollinators. The understory-flowering tree species had large dish- or funnel-shaped flowers and endothermic pollinators able to tolerate the dark and cold conditions under the canopy. The individual trees of canopy-flowering tree species produced large numbers of flowers simultaneously (mass-flowering) and had a well synchronized flowering period. Each canopy-flowering tree species segregated its flowering time from those of the anothers. Climber and epiphyte species and most of the understory-flowering tree species produced small numbers of flowers sequentially (extended flowering) and showed a long flowering period.     

Primary structure of a protein isolated from reef shark (Carcharhinus springeri) cartilage that is similar to the mammalian C-type lectin homolog, tetranectin.

During the course of characterization of low molecular weight proteins in cartilage, we have isolated a protein from reef shark (Carcharhinus springeri) cartilage that bears a striking resemblance to the tetranectin monomer originally described by Clemmensen et al. (1986, Eur. J. Biochem. 156, 327-333). The protein was isolated by extraction of neural arch cartilage with 4 M guanidine hydrochloride, dialysis of the extract to bring the guanidine to 0.4 M (reassociating proteoglycan aggregates), followed by cesium chloride density gradient removal of the proteoglycans. The amino acid sequence had 166 amino acids and a calculated molecular weight of 18,430. The shark protein was 45% identical to human tetranectin, indicating that it was in the family of mammalian C-type lectins and that it was likely to be a shark analog of human tetranectin. The function of tetranectin is unknown; it was originally isolated by virtue of its affinity for the kringle-4 domain of plasminogen. Sequence comparison of human tetranectin and the shark-derived protein gives clues to potentially important regions of the molecule.     

Changes in carbon storage in temperate humic loamy soils after forest clearing and continuous corn cropping in France

Soil samples from forest and agricultural sites in three areas of southwest France were collected to determine the effect of forest conversion to continuous intensive corn cropping with no organic matter management on soil organic carbon (C) content. Soils were humic loamy soils and site characteristics that may affect soil C were as uniform as possible (slope, elevation, texture, soil type, vegetation). Three areas were selected, with adjacent sites of various ages of cultivation (3 to 35 yr), and paired control forest sites. The ploughed horizon (0-Dt cm) and the Dt-50 cm layer were collected at each agricultural site. In forest sites, each 10 cm layer was collected systematically down to 1 meter depth. Carbon concentrations were converted to total content to a given depth as the product of concentration, depth of sample and bulk density, and expressed in units of kg m^-2. For each site and each sampled layer, the mineral mass of soil was calculated, in order to base comparisons on the same soil mass rather than the same depth. The pattern of C accumulation in forest soils showed an exponential decrease with depth. Results suggested that soil organic carbon declined rapidly during the first years of cultivation, and at a slower rate thereafter. This pattern of decrease can be fitted by a bi-exponential model assuming that initial soil organic carbon can be separated into two parts, a very labile pool reduced during the first rapid decline and more refractory fractions oxidizing at a slower rate. Sampling to shallow depths (0-Dt cm) resulted in over-estimation of the rate of carbon release in proportion to the initial amount of C, and in under-estimation of the total loss of C with age. The results for the 0–50 cm horizon indicated that losses of total carbon average about 50% in these soils, ranging in initial carbon content from 19 to 32.5 kg m^-2. Carbon release to the atmosphere averaged 0.8 kg m^-2 yr^-1 to 50 cm depth during the first 10 years of cultivation. The results demonstrate that temperate soils may also be an important source of atmospheric carbon, when they are initially high in carbon content and then cultivated intensively with no organic matter management.     

Estimating regional carbon stocks and spatially covarying edaphic factors using soil maps at three scales

Most estimates of regional and global soil carbon stocks are based on extrapolations of mean soil C contents for broad categories of soil or vegetation types. Uncertainties exist in both the estimates of mean soil C contents and the area over which each mean should be extrapolated. Geographic information systems now permit spatially referenced estimates of soil C at finer scales of resolution than were previously practical. We compared estimates of total soil C stocks of the state of Maine using three methods: (1) multiplying the area of the state by published means of soil C for temperate forests and for Spodosols; (2) calculating areas of inclusions of soil taxa in the 1:5,000,000 FAO/UNESCO Soils Map of the World and multiplying those areas by selected mean carbon contents; and (3) calculating soil C for each soil series and map unit in the 1:250,000 State Soil Geographic Data Base (STATSGO) and summing these estimates for the entire state. The STATSGO estimate of total soil C was between 23% and 49% higher than the common coarse scale extrapolations, primarily because STATSGO included data on Histosols, which cover less than 5% of the area of the state, but which constitute over one-third of the soil C. Spodosols cover about 65% of the state, but contribute less than 39% of the soil C. Estimates of total soil C in Maine based on the FAO map agreed within 8% of the STATSGO estimate for one possible matching of FAO soil taxa with data on soil C, but another plausible matching overestimated soil C stocks. We also compared estimates from the 1:250,000 STATSGO database and from the 1:20,000 Soil Survey Geographic Data Base (SSURGO) for a 7.5 minute quadrangle within the state. SSURGO indicated 13% less total soil C than did STATSGO, largely because the attribute data on depths of soil horizons in SSURGO are more specific for this locality. Despite localized differences, the STATSGO database offers promise of scaling up county soil survey data to regional scales because it includes attribute data and estimates of areal coverage of C-rich inclusions within map units. The spatially referenced data also permit examination of covariation of soil C stocks with soil properties thought to affect stabilization of soil C. Clay content was a poor predictor of soil C in Maine, but drainage class covaried significantly with soil C across the state.     

Biogeographic context is related to local scale tree demography,co-occurrence and functional differentiation

Identifying the drivers of community structure and dynamics is a major pursuit in ecology. Emphasis is typically placed on the importance of local scale interactions when attempting to explain these fundamental ecological patterns. However, regional scale phenomena are also important predictors. The importance of regional scale context should be more evident in assemblages where multiple species are close to their range margins. Here, we test the importance of regional scale context using data from a temperate forest plot that contains two species groups – one near its northern range limit and one near its southern range limit. We show the proximity of species to their southern or northern range margins is linked to local scale co-occurrence, similarity in gene expression responses to a key environmental driver, demographic performance and inter-specific variation in conspecific negative density dependence. In sum, many of the key local scale patterns and processes of interest to community ecologists are linked to biogeographic context that is frequently ignored.