油藏嗜热菌与膨润土的相互作用及其对储层防膨的意义

[目的]本文从胜利油田沾3区块的高温油藏的原油采出液中分离得到一株嗜热菌,通过其与膨润土的相互作用,尝试探讨油藏微生物作为油藏储层中水敏性矿物（如蒙皂石）改性剂的可能性。[意义]研究结果将在降低水敏矿物的膨胀性能,为解决水驱采油中遇到的水敏效应的瓶颈问题提供微生物的新途径。[结果]所得菌株为革兰氏阳性菌,呈杆状,具芽孢,兼性厌氧,鉴定为Geobacillus icigianus SL-1。菌株SL-1在厌氧条件下能够还原蒙皂石的结构铁。扫描电镜（SEM）结果显示,无菌对照体系中,蒙皂石呈不规则薄片状。而经微生物作用后,除薄片状蒙皂石外,另有板状次生矿物的生成。进一步能谱（EDS）分析表明,与薄片状蒙皂石相比,板状矿物含有较高的Al/Si比值,且含有明显的K⁺信号。XRD结果显示,经过微生物作用后,固相物质中蒙皂石的百分比下降至47.7%,伊利石百分比上升至29.1%,而无菌对照组中蒙皂石的百分含量则为70.4%,伊利石的百分比则为19.8%。XRD物相分析和EDS结果均证实经过微生物作用后,部分蒙皂石转化成了伊利石。膨胀性能的分析进一步揭示菌株SL-1作用后,矿物膨胀性较初始矿物显著降低,缩膨率达到25.9%。以上结果为油藏储层防膨提供了重要的实验依据。     

Remediation of Clay Soils Contaminated with Potentially Toxic Elements: The Santo Amaro Lead Smelter,Brazil, Case

The remediation of clayey soil contaminated by potentially toxic elements is a challenging task, especially because of the low permeability and strong affinity of such toxic elements, which prevent the effective use of low-cost in situ remediation methods. The clay soil from the region of the former Santo Amaro primary lead smelter has high concentrations of potentially toxic elements, especially Pb, Cd, Sb, and Zn. This study presents a preliminary evaluation of remediation by soil washing and thermal stabilization, which can support clean-up initiatives for this site. The treatment results indicate that soil washing using EDTA can be an effective method to clean up the soil; however, the solid-liquid separation step by filtration is slow. Soil thermal treatment at temperatures higher than 800°C in an oxidant atmosphere results in the formation of ceramic structure because of the high smectite content, which stabilizes the potentially toxic elements. The estimated cost for remediation by soil excavation, replacement, and stabilization, of the critically contaminated site at the Santo Amaro region is estimated at about 20 to 30 million US$.     

Smectite Reduction by Shewanella Species as Facilitated by Cystine and Cysteine

Exogenous electron transfer mediators employed by Fe(III)-reducing bacteria are believed to govern the kinetics and equilibrium of bioreduction of Fe(III) in solid phase. In contrast to a large number of studies on humic substances and analog anthraquinone-2,6-disulfonate (AQDS), our knowledge of other potential electron shuttles involved in Fe(III) reduction is limited. The purpose of the present study was to understand the role of cystine and cysteine in reduction of iron-rich smectite (nontronite, NAu-2) by Shewanella species. A series of abiotic and biotic experiments were conducted in nongrowth media (bicarbonate buffered, pH = 7.0). Fe(II) and cysteine concentrations were monitored over the course of the bioreduction experiments with wet chemistry, and the unreduced and reduced nontronites were characterized by X-ray diffraction (XRD), scanning electron microscopy (SEM) and transmission electron microscopy (TEM). The results indicated that all Shewanella species tested here were capable of reducing cystine to cysteine. Either cystine or cysteine amendments significantly stimulated the Fe(III) bioreduction rate and extent. The initial reduction rate was linearly correlated with cystine or cysteine concentration. The reduction extent (18.7–22.3%) calculated from bioreactor with cystine or cysteine was slightly lower than those with AQDS (26.3%). Mineralogical analysis demonstrated that cystine or cysteine facilitated the reaction of smectite to illite as a result of Fe(III) bioreduction. Thus, we concluded that, in our experiments, cystine and cysteine functioned as electron carrier in the smectite reduction systems, and were favorable factors influencing smectite illitization.     

Fate of pathological prion (PrPsc92–138) in soil and water: prion-clay nanoparticle molecular dynamics

Pathogenic prion protein scrapie (PrP^sc) may contaminate soils for decades and remain in water in colloidal suspension, providing infection pathways for animals through the inhalation of ingested dust and soil particles, and drinking water. We used molecular dynamics simulations to understand the strong binding mechanism of this pathogenic peptide with clay mineral surfaces and compared our results to experimental works. We restricted our model to the moiety PrP(92–138), which is a portion of the whole PrP^sc molecule responsible for infectivity and modeled it using explicit solvating water molecules in contact with a pyrophyllite cleavage plane. Pyrophyllite is taken as a model for common soil clay, but it has no permanent structural charge. However, partial residual negative charges occur on the cleavage plane slab surface due to a slab charge unbalance. The charge is isotropic in 2D and it was balanced with K⁺ ions. After partially removing potassium ions, the peptide anchors to the clay surface via up to 10 hydrogen bonds, between protonated lysine or histidine residues and the oxygen atoms of the siloxane cavities. Our results provide insight to the mechanism responsible for the strong association between the PrP^sc peptide and clay nanoparticles and the associations present in contaminated soil and water which may lead to the infection of animals.     

Changes in soil mineralogy and exchangeable cation pools in stands of Norway spruce planted on former pasture land

Chemical and mineralogical properties of the soils in 35- and 70-year-old stands of Norway spruce (Picea abies (L.) Karst), planted on former pasture and were studied at Asa Experimental Forest, southern Sweden. Remnant deciduous forests bordering the spruce stands were used as controls to assess possible tree-species-related effects on soil development. All soils are acid with little difference in soil pH between the spruce and deciduous stands. However, the saturation of the exchange complex with Mg is lower beneath spruce and the total exchangeable Mg pool in the upper meter of these soils is one third of the Mg store beneath the deciduous stands. Amphibole, biotite and chlorite are the major sources of Mg in the parent soil. The clay fraction of the topsoil beneath spruce has been depleted of all these easily weatherable ferromagnesian minerals. Apart from weathering-resistant primary silicates, the clay fraction consists almost exclusively of expandable, smectitic mixed-layer minerals, which are believed to be the products of advanced stages of biotite weathering. In contrast, vermiculite is the dominant secondary mineral in the A-horizon in the deciduous stands, and some chlorite has survived. Moreover, a greater depth of in situ weathering is indicated for the soil of the old spruce stands where biotite/vermiculite mixed-layers have formed in the C-horizon as products of early stages of biotite weathering. Thus, differences between the paired sites in soil solution chemistry are supported by the qualitative differences in soil mineralogy, and are believed to reflect divergent biotic and/or abiotic processes in the different stand types. This revised version was published online in August 2006 with corrections to the Cover Date.     

Transformation of Chlorites by Primary Biological Agents—A Synthesis of X-ray Diffraction Studies

Chlorites in the bio interaction zone (or rhizosphere soils) are transformed by bacteria, fungi and mosses into expanding 2:1 minerals with different cation fixation capacities. Some of the new clays are smectitic, expanding with glycol treatment in the Ca-saturated state, while others have a high intensity 001 peak unchanged by glycol treatment. Most of all, potassium saturation results in different hydration states in mixed layered phases or as individual illitic units or minerals indicating dissimilarity in charge site and intensity on the 2:1 layers of the original chlorites. However, the overall pattern is that of the transformation of high temperature chlorite to expanding clay minerals with high exchange capacities. Biotic processes appear to modify chlorites in a rather homogeneous manner compared to the formation of interstratified minerals common in the water-rock interaction pathway. These high charge expanding clays left after the biologically mediated reactions with chlorites are strong potential sites for cation (e.g., magnesium and potassium) capture and storage to supply the nutritional requirements of plants and organisms.     

Smectite promotes probiotic biofilm formation in the gut for cancer immunotherapy

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