New versatile cloning and sequencing vectors based on bacteriophage M13

A new pair of cloning and sequencing vectors based on bacteriophage M13mp7 has been developed. These vectors (M13tg130 and M13tg131) contain, in addition to the EcoRI, BamHI, HindIII, SmaI, SalI and PstI sites present in other vectors [cf., M13mp8 and M13mp9, Messing and Vieira, Gene 19 (1982) 269-276], unique restriction recognition sequences for the enzymes EcoRV, KpnI, SphI, SstI and XbaI. A restriction site for the enzyme BglII has been incorporated into the polylinker region of one of the vector pair to permit rapid discrimination between the two vectors.     

Accumulation of arachidonic acid-rich triacylglycerols in the microalga Parietochloris incisa (Trebuxiophyceae,Chlorophyta)

The freshwater green microalga Parietochloris incisa is the richest known plant source of the polyunsaturated fatty acid (PUFA), arachidonic acid (20:4omega6, AA). While many microalgae accumulate triacylglycerols (TAG) in the stationary phase or under certain stress conditions, these TAG are generally made of saturated and monounsaturated fatty acids. In contrast, most cellular AA of P. incisa resides in TAG. Using various inhibitors, we have attempted to find out if the induction of the biosynthesis of AA and the accumulation of TAG are codependent. Salicylhydroxamic acid (SHAM) affected a growth reduction that was accompanied with an increase in the content of TAG from 3.0 to 6.2% of dry weight. The proportion of 18:1 increased sharply in all lipids while that of 18:2 and its down stream products, 18:3omega6, 20:3omega6 and AA, decreased, indicating an inhibition of the Delta12 desaturation of 18:1. Treatment with the herbicide SAN 9785 significantly reduced the proportion of TAG. However, the proportion of AA in TAG, as well as in the polar lipids, increased. These findings indicate that while there is a preference for AA as a building block of TAG, the latter can be produced using other fatty acids, when the production of AA is inhibited. On the other hand, inhibiting TAG construction did not affect the production of AA. In order to elucidate the possible role of AA in TAG we have labeled exponential cultures of P. incisa kept at 25 degrees C with [1-14C]arachidonic acid and cultivated the cultures for another 12 h at 25, 12 or 4 degrees C. At the lower temperatures, labeled AA was transferred from TAG to polar lipids, indicating that TAG of P. incisa may have a role as a depot of AA that can be incorporated into the membranes, enabling the organism to quickly respond to low temperature-induced stress.     

Age of A2 Horizon Charcoal and Forest Structure near Porto Trombetas,Pará, Brazil1

To study the structure and composition of old‐growth forest in the Saracá‐Taquera National Forest near Porto Trombetas, Brazil, we established 36 0.25 ha plots and described the vegetation. We collected charcoal from the A2 soil horizon of each plot for radiocarbon dating. Although fires have been very rare in this forest during historic times, the presence of charcoal in these soils indicates fire at some earlier period. The ages (conventional radiocarbon age adjusted to 1997) of the charcoal ranged from 177 to 1547 years. These ages, however, did not correlate significantly with any of several measures of biodiversity or stand characteristics. The relative uniformity of the current old‐growth forest indicates that either the prehistoric fires were of such low intensity that they had little long‐term effect on the vegetation or that the present stands have progressed to near steady state.     

Prehistorically modified soils of central Amazonia: a model for sustainable agriculture in the twenty-first century

Terra Preta soils of central Amazonia exhibit approximately three times more soil organic matter, nitrogen and phosphorus and 70 times more charcoal compared to adjacent infertile soils. The Terra Preta soils were generated by pre-Columbian native populations by chance or intentionally adding large amounts of charred residues (charcoal), organic wastes, excrements and bones. In this paper, it is argued that generating new Terra Preta sites ('Terra Preta nova') could be the basis for sustainable agriculture in the twenty-first century to produce food for billions of people, and could lead to attaining three Millennium Development Goals: (i) to combat desertification, (ii) to sequester atmospheric CO2 in the long term, and (iii) to maintain biodiversity hotspots such as tropical rainforests. Therefore, large-scale generation and utilization of Terra Preta soils would decrease the pressure on primary forests that are being extensively cleared for agricultural use with only limited fertility and sustainability and, hence, only providing a limited time for cropping. This would maintain biodiversity while mitigating both land degradation and climate change. However, it should not be overlooked that the infertility of most tropical soils (and associated low population density) is what could have prevented tropical forests undergoing large-scale clearance for agriculture. Increased fertility may increase the populations supported by shifting cultivation, thereby maintaining and increasing pressure on forests.     

Relevance of Global Forest Change Data Set to Local Conservation: Case Study of Forest Degradation in Masoala National Park,Madagascar

A global data set on forest cover change was recently published and made freely available for use (Hansen et al. 2013. Science 342: 850–853). Although this data set has been criticized for inaccuracies in distinguishing vegetation types at the local scale, it remains a valuable source of forest cover information for areas where local data is severely lacking. Masoala National Park, in northeastern Madagascar, is an example of a region for which very little spatially explicit forest cover information is available. Yet, this extremely diverse tropical humid forest is undergoing a dramatic rate of forest degradation and deforestation through illegal selective logging of rosewood and ebony, slash‐and‐burn agriculture, and damage due to cyclones. All of these processes result in relatively diffuse and small‐scale changes in forest cover. In this paper, we examine to what extent Hansen et al.'s global forest change data set captures forest loss within Masoala National Park by comparing its performance to a locally calibrated, object‐oriented classification approach. We verify both types of classification with substantial ground truthing. We find that both the global and local classifications perform reasonably well in detecting small‐scale slash‐and‐burn agriculture, but neither performs adequately in detecting selective logging. We conclude that since the use of the global forest change data set requires very little technical and financial investment, and performs almost as well as the more resource‐demanding, locally calibrated classification, it may be advantageous to use the global forest change data set even for local conservation purposes.     

Cogongrass (Imperata cylindrica)—Biology,Ecology, and Management

Cogongrass is considered to be one of the ten most troublesome and problematic weedy species in the world. This species is found throughout tropical and subtropical regions, generally in areas disturbed by human activities. Over 100 common names have been associated with cogongrass, including japgrass, speargrass, alang-alang, and bladygrass. Although this species has several commercial uses, the problems associated with its weediness far outweigh most positive benefits. Cogongrass is a major impediment to reforestation efforts in southeast Asia, the number one weed in agronomic and vegetable production in many parts of Africa, and is responsible for thousands of hectares of lost native habitat in the southeastern U.S. Biologically, cogongrass possesses several features that foster its spread and persistence. Management efforts for cogongrass consist of an integrated approach with several control strategies. In agronomic production, the use of cover crops is widely successful, but incorporation into the overall production scheme is challenging. Success has been achieved with continuous deep tillage or chemical applications, but long-term eradication/suppression must employ sustainable revegetation strategies.     

氮添加和采脂对湿地松林土壤酶活性及酶化学计量比的影响

大气氮沉降和采脂会引起树木生长和代谢的变化,从而影响土壤养分循环和酶活性.土壤酶和酶化学计量可以揭示土壤碳、氮循环和微生物生长代谢过程的养分限制,但目前亚热带湿地松人工林土壤酶和酶化学计量对氮添加和采脂的响应还不清楚.以亚热带北缘的湿地松人工林为研究对象,设置采脂(resin tapping,RT)和未采脂(no re...     

缙云山风灾迹地恢复群落主要乔木树种种间联结性

应用方差比率法,并通过2×2列联表χ2检验法及利用联结系数AC指数测定法研究了缙云山自然保护区风灾迹地恢复群落自然恢复样地和人工恢复样地中主要乔木树种的种间联结性。结果表明:(1)自然恢复样地主要乔木种群间在总体上呈一定的正关联;而人工恢复样地种群间在总体上呈负关联;(2)2×2列联表的χ2检验共有5个(3)种对为显著正关联(括号内为人工恢复群落的种对数,下同),2个(1)种对为显著负关联;(3)联结系数(AC)指数标量出了自然恢复和人工恢复样地中种对间的联结程度和相伴随出现的机率,两种恢复方式中的多数乔木种群间的联结性不显著且联结程度较低,绝大多数乔木树种之间无显著关联,而且人工恢复比自然恢复无关联性更强;(4)种对间的正关联,主要是由于它们具有相近的生物学特性以及对生境具有相似的生态适应性所致,种对间的负关联主要是由于物种间的空间排斥,适应不同的微环境的结果;(5)人工恢复和自然恢复所在的群落处于演替的不稳定阶段。     

Idaho forest growth response to post‐thinning energy biomass removal and complementary soil amendments

Utilization of woody biomass for biofuel can help meet the need for renewable energy production. However, there is a concern biomass removal will deplete soil nutrients, having short‐ and long‐term effects on tree growth. This study aimed to develop short‐term indicators to assess the impacts of the first three years after small‐diameter woody biomass removal on forest productivity to establish optimal biomass retention levels for mixed‐conifer forests in the Inland Northwest region, and to evaluate the ability of soil amendments to compensate for potential adverse effects from biomass removal. We examined impacts of four biomass retention‐level treatments at two study locations: full biomass removal (0x), full biomass retention (1x), double biomass retention (2x), and unthinned control. We combined biomass retention with four soil amendment treatments: biochar (B), fertilizer (F), fertilizer and biochar combined (FB), and an untreated control (C). We considered treatment effects on basal area and total stem volume growth for all trees per plot (plot trees) and for the six largest trees per plot (crop trees). Biomass removal had no effect on plot (P > 0.40) or crop tree growth (P > 0.65) compared to normal biomass retention. High biomass retention (2x) decreased plot tree growth as compared to normal biomass retention (1x) levels (P < 0.05) after three years. This growth difference was not explained by soil moisture, temperature, or nutrient uptake. While there were strong tree growth differences between study locations, patterns of biomass and amendment treatment responses did not differ. Fertilizer increased basal area growth and total volume growth (P < 0.10) as expected, because nitrogen is limiting in the region. Biochar had no effect on tree growth (P > 0.47). Initial findings after three years suggest removing small‐diameter biomass for biofuel feedstocks is feasible in the Inland Northwest without negative impacts on tree growth.     

Forest soil respiration and exoenzyme activity in western North America following thinning,residue removal for biofuel production,and compensatory soil amendments

Cellulosic biofuel from forest thinning operations is a potential renewable energy source in regions with overstocked forests such as those in western United States. However, it is possible that biomass removal can deplete nutrients from soil, which can alter soil respiration (R_s) and exoenzyme properties, and potentially impact tree growth. This study evaluates the impact of biomass removal on R_s and exoenzyme properties and the capacity of soil amendments to counteract any potential effects. At two study locations, we created four post‐thinning biomass retention levels: full biomass removal (0×), full biomass retention (1×), double biomass retention (2×), and a no‐thin treatment. Four soil amendment treatments were applied to each biomass retention level: N fertilizer (F), biochar (B), fertilizer plus biochar (FB), and an untreated control (C). We evaluated treatment effects on R_s and activity of four exoenzymes to represent C‐cycling, N‐release, and P‐release processes. Biomass retention levels had no effect on R_s (p = .42) or exoenzyme activities (p > .29). Variation in exoenzyme activity was explained by location, season, soil organic matter, soil moisture content, and temperature. Variation in R_s was explained by the same variables, in addition to C‐cycling exoenzyme activity and soil pH. Soil amendments had no effect on exoenzyme activities (p > .49), and no main effect on R_s (p = .48), though amendments influenced R_s differently at each location (p = .02). Short‐term findings suggest small‐diameter biomass removal for cellulosic biofuel production will not impact R_s and exoenzyme properties, and paired with our tree growth study, provide evidence that biofuel systems are a feasible renewable energy source in the western North America.