Conservation genetics of South American aquatic mammals: an overview of gene diversity,population structure,phylogeography, non‐invasive methods and forensics

• 1 Most aquatic mammals have high dispersal potential, and there are often severe conservation concerns related to their legal or illegal harvesting. Therefore, economic, social and forensic factors often arise in decisions relating to their population management. Molecular markers are essential tools in modern conservation genetics, revealing previously unknown aspects of aquatic mammal behaviour, natural history, population structure and demography. Molecular markers also have been used to define management units, to recognize taxonomic units, to conduct forensic analyses and to control illegal wildlife trade, providing valuable information for decision‐making in wildlife conservation and management.
• 2 We review studies published in peer‐reviewed journals between 1993 and 2010, in which genetic approaches have been applied to conservation‐related issues involving natural populations of 25 species of aquatic mammals in South America. These studies cover just 34% of the 70 aquatic mammal species recorded in South America.
• 3 Most of the studies are related to population structure, phylogeography, gene flow and dispersal movements. In addition, recent findings relate to evolutionarily significant units, management units, forensics and conservation policy.
• 4 Finally, we look to the future and, based on numbers of studies and conservation concerns, suggest which species, geographic areas and genetic studies should be prioritized. Moreover, we discuss constraints on research and suggest collaborative works that would provide critical information towards the effective conservation and management of aquatic mammals in South America.

     

A new dugong species (Sirenia,Dugongidae) from the Eocene of Catalonia (NE Iberian Peninsula)

A new stem dugongid species, Prototherium ausetanum sp. nov. (Dugongidae, Halitheriinae), is described based on a cranium from the middle Eocene of Mas Vilageliu (Tona, NE Iberian Peninsula). The new species displays a combination of features that enables its distinction from other halitheriines, including Prototherium veronense (type species of the genus), Prototherium? intermedium (which likely belongs to a different genus), and Prototherium? montserratense (here considered a nomen dubium), as well as Eotheroides spp. In overall morphology (e.g., dolichocephaly) the new species more closely resembles species previously included in Prototherium. However, a cladistic analysis based on craniodental features recovers the new species as the sister taxon of Eotheroides aegyptiacum (type species of this genus), further constituting a polytomy with P. veronense, Eotheroides lambondrano and the remaining Halitheriinae. Our analysis further indicates that P.? intermedium is more derived than other species of Prototherium, but it does not conclusively resolve the phylogenetic relationships between the included species of Prototherium and Eotheroides. A deeper taxonomic revision of these two genera would be required in order to better resolve the phylogeny of early dugongids.     

Habitat, Niche, and Evolution of Sirenian Mating Systems

Lek polygyny, monogamy and scramble promiscuity have been reported in the two families and five species of Recent sirenians. Evidence for lek mating in the dugong or "sea pig" (Dugong dugon), monogamy in Steller's sea cow (Hydrodamalis gigas), and scramble promiscuity in the three manatees or "river cows" (Trichechus manatus, Trichechus senegalensis, and Trichechus inunguis), as well as in one dugong population, is reviewed. Sirenians are long-lived "K-strategists" with precocious young, few potential young per female lifetime, high female investment in a few young, little apparent opportunity for post-copulatory male investment, and "paenungulate" reproductive physiologies that appear to increase uncertainty as to female receptivity and assurance as to paternity. Common features notwithstanding, diverse habitats, climates, and niches may account for mating system diversity. Scenarios for evolution of diverse mating systems, based on our understanding of mating systems in terrestrial herbivores, are presented. The dugong retains the ancestral low latitude marine, seagrass dependent, bottom-feeding, niche characteristic of diverse, tusked, Oligocene and Miocene sirenian faunas. With a long breeding season and high polygyny potential, retention of tusks by male dugongs in the absence of any foraging function suggests that tusks may have always had social functions and lekking may be of ancient origin. The sea cow lineage, isolated on the shoreline of the northeastern Pacific as seagrasses declined, turned to surface foraging on chemically undefended kelps and lost both tusks and molar teeth. As it followed kelps northwards, adaptation to a cold-temperate climate compressed the breeding season, limited the polygyny potential, and, in conjunction with incentives for paternal investment, favored pair bonding and the monogamous mating system postulated by George Steller (1751). Manatees, evolving in botanically-rich fresh waters of the Amazon basin as an aberrant offshoot of the marine dugongid line, remained in the tropics and retained a high polygyny potential, but became generalist foragers in the upper few meters of the water column. Labyrinthine river systems provided little opportunity for male aggregation and display (or rhizome foraging) and tusks were lost as the uncertainty of female inseminability drove the mating system toward scramble promiscuity and sperm competition. An observation of manatee-like behavior in a dense and sedentary dugong population in eastern Australia suggests plasticity in sirenian mating, and the likelihood that a form of scramble promiscuity may exist where no suitable site for lekking is available, where large group size makes female defence impossible, or where vulnerability of territorial males to hunting has resulted in extirpation of a lekking tradition. Dugong and manatee life history characteristics conform to expectations based on observed differences in mating systems.     

Cytochromeb gene of marine mammals: Phylogeny and evolution

The DNA sequences of the mitochondrial cytochromeb gene of marine mammals (Cetacea, Pinnipedia, Sirenia) were compared with cytochromeb genes of terrestrial mammals including the semiaquatic hippopotamus. The comparison included 28 sequences, representing 22 families and 10 orders. The dugong (order Sirenia) sequence associated with that of the elephant, supporting the Tethytheria clade. The fin whale and dolphin (order Cetacea) sequences are more closely related to those of the artiodactyls, and the comparison suggests that the hippopotamus may be the extant artiodactyl species that is most closely related to the cetaceans. The seal sequence may be more closely related to those of artiodactyls, cetaceans, and perissodactyls than to tethytheres, rodents, lagomorphs, or primates. The cytochromeb proteins of mammals do not evolve at a uniform rate. Human and elephant cytochromeb amino acid sequences were found to evolve the most rapidly, while those of myomorph rodents evolved slowest. The cytochromeb of marine mammals evolves at an intermediate rate. The pattern of amino acid substitutions in marine mammals is similar to that of terrestrial mammals.