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1.
2.
Similarities in the discrete mode and size of contact areas of a wide range of protein complexes allows us to suggest the existence of a limited number of types of inter-protein interactions. Comparison of structures of bound determinants indicates that the double-module, 1-X-3 type of motif is widespread in recognition processes. Thus, in many cases, the sites of ligand recognition are formed by two significant amino acids and separated by insignificant ones. Typical examples of such motifs are the RGD sequence of some adhesive and haemostatic proteins, the primary sites for plasminogen sorption on the fibrin network, the reactive sites of protein inhibitors of serine proteinases, and the sites for activation of the hydrolysis of protein pro-forms and receptors. It is assumed that there is widespread double-module determinants in many inter-protein interactions. 相似文献
3.
4.
Proteinase K, the extracellular serine endopeptidase (E.C. 3.4.21.14) from the fungus Tritirachium album limber, is homologous to the bacterial subtilisin proteases. The binding geometry of the synthetic inhibitor carbobenzoxy-Ala-Phechloromethyl Ketone to the active site of proteinase K was the first determined from a Fourier synthesis based on synchrotron X-ray diffraction data between 1.8 Å and 5.0 Å resolution. The protein inhibitor complexes was refined by restrained least-squares minimization with the data between 10.0 and 1.8 Å. The final R factor was 19.1% and the model contained 2,018 protein atoms, 28 inhibitors atoms, 125 water molecules, and two Ca2+ ions. The peptides portion of the inhibitor is bound to the active center of proteinase K by means of a three-stranded antiparallel pleated sheet, with the side chain of the phenylalanine located in the P1 site. Model building studies, with lysine replacing phenylalanine in the inhibitor, explain the relatively unspecific catalytic activity of the enzyme. 相似文献
5.
Jean-Claude Scimeca Robert Ballotti Chantal Filloux Emmanuel Van Obberghen 《Molecular and cellular biochemistry》1992,109(2):139-147
Using the synthetic peptide substrate Kemptide and cytosolic extracts of mouse fibroblasts transfected with a human insulin receptor cDNA construct, we have studied an insulin-sensitive serine kinase activity. This activity is rapidly stimulated by insulin (maximum within 5 min) and also by orthovanadate. During cell extract preparation, paranitrophenylphosphate and phosphotyrosine are able to preserve the enzyme activity, while phosphothreonine and phosphoserine fail to do so. Using antiphosphotyrosine antibodies, specific immunoprecipitation of this insulin- and orthovanadate-sensitive serine kinase was obtained. We then analysed by gel filtration chromatography eluates containing tyrosine-phosphorylated proteins obtained from unstimulated, insulin- and vanadate-treated cells. We found that several activities, with molecular weights estimated to be 30 kDa and smaller, are stimulated by both, insulin and orthovanadate. As a whole, our data indicate that insulin and orthovanadate enhance the cytosolic content in at least 2 or 3 phosphotyrosine-containing serine kinase activities.Abbreviations EGF
Epidermal Growth Factor
- IGF I
Insulin-like Growth Factor I
- PDGF
Platelet-Derived Growth Factor
- DMEM
Dulbecco's Modified Eagle's Medium
- FCS
Fetal Calf Serum
- PBS
Phosphate Buffered Saline
- PNPP
Para-nitrophenylphosphate
- BSA
Bovine Serum Albumin
- -Tyr
Antiphosphotyrosine Antibodies
- MAP 2
Microtubule-Associated Protein 2
- Hepes
N-(2-hydroxyethyl)piperazine-N-2-ethanesulfonic acid
- EDTA
Ethylenediamine Tetraacetic Acid
- DTT
Dithiothreitol
- SDS-PAGE
Sodium Dodecyl Sulfate/Polyacrylamide Gel Electrophoresis
- EGTA
[Ethylenebis(oxyethylenenitrilo)] Tetraacetic Acid
- TRIS
Tris(hydroxymethyl)-Aminoethane
- IRSK
Insulin Receptor-Associated Serine Kinase
- KIK
Kemptide Insulin-stimulated Kinase 相似文献
6.
The 130 kDa atrial natriuretic factor receptor (ANF-R1) purified from bovine adrenal zona glomerulosa is phosphorylated in vitro by serine/threonine protein kinases such as cAMP-, cGMP-dependent and protein kinase C. This phosphorylation is independent of the presence of ANF (99–126) and there is no detectable intrinsic kinase activity associated with the ANF-R1 receptor or with its activated form. In bovine adrenal zona glomerulosa cells, TPA (phorbol ester) induces a marked inhibition of the ANF-stimulated cGMP accumulation as well as of the membrane ANF-sensitive guanylate cyclase catalytic activity without any change in the binding capacity or affinity for 125I-ANF. However, we have demonstrated a significant 32P incorporation in the ANF-R1 receptor of the TPA-treated cells. The effect of TPA on the zona glomerulosa ANF-R1 receptors was abolished by calphostin C, a specific protein kinase C inhibitor. Altered ANF actions due to blunted response of guanylate cyclase to ANF could be a consequence of the ANF receptor phosphorylation by excessive activity of protein kinase C and might be involved in the pathogenesis of hypertension.Abbreviations ANF
Atrial Natriuretic Factor
- ANF-R1
Atrial Natriuretic Factor Receptor, subtype 1
- ATP
Adenosine Triphosphate
- CaCl2
Calcium Chloride
- cAMP
Adenosine cyclic 3,5-Monophosphate acid
- cGMP
Guanosine cyclic 35-Monophosphate acid
- EDC
1-Ethyl-3-[3-Dimethylaminopropyl] Carbodiimide
- EDTA
Ethylenediaminetetraacetic Acid
- GTP
Guanosine Triphosphate
- IBMX
3-isobutyl-1-methylxanthine
- kDa
Kilodaltons
- MgCl2
Magnesium Chloride
- MgAC
Magnesium Acetate
- NaCl
Sodium Chloride
- PAGE
Polyacrylamide Gel Electrophoresis
- PKA
cAMP-dependent protein kinase
- PKG
cGMP-dependent Protein Kinase
- PKC
Calcium/Phospholipid-dependent Protein Kinase
- RIA
Radioimmunoassay
- SDS
Sodium Dodecyl Sulfate
- SHR
Spontaneously Hypertensive Rat
- Tris HCl
Tris (Hydroxymethyl) aminomethane Hydrochloride
- TPA
12-O-Tetradecanoyl-Phorbol-13-Acetate 相似文献
7.
A step leading to the formation of the covalent complexes between porcine pancreatic elastase (PPE) and 7-[(alkylcarbamoyl)amino]-4-chloro-3-ethoxyisocoumarins (alkylHNCO-EICs) is the formation of the noncovalent Michaelis complex. No average structures are available for the Michaelis complexes of PPE with alkylHNCO-EICs. We present the results of an initial step in obtaining these structures and have determined kinetic constants as well. The kinetic results indicate that formation of the Michaelis complex is what differentiates the effectiveness of these inhibitors in inactivating PPE. The structural and kinetic results together suggest that the structure of the Michaelis complex is necessary for the design of potent alkylHNCO-EIC inhibitors of PPE. Two novel alkylHNCO-EICs are predicted to be the best inhibitors of this series. An alternate mechanism for serine protease inhibition is also proposed. Evidence for, and studies that may add support to, the hypothesized mechanism are discussed. 相似文献
8.
Y. Mitsui H. Akagawa H. Onishi S. Itoh K. T. Nakamura Y. Iitaka 《Journal of biosciences》1985,8(1-2):481-489
The complex of a bacterial alkaline serine proteinase, subtilisin BPN’, with its proteinaceous inhibitorStreptomyces subtilisin inhibitor is unique in several respects, compared with other similar complexes containing serine proteinases of trypsin family. In addition to the usual antiparallelβ-sheet involving P1-P3 residues of the inhibitor, P4-P6 residues form antiparallelβ-sheet with a previously unnoticed chain segment (the ‘S4-6 site’) of subtilisin. The ‘S4-6 site’ does not exist in serine proteinases of trypsin family, whether of mammalian or microbial origin. Global induced-fit movement seems to occur on the ‘trapped substrate’Streptomyces subtilisin inhibitor: a channel-like structure in SSI remote from the contact region becomes about 2 Å wider upon complexing with subtilisin. Main role of the secondary contact region ofStreptomyces subtilisin inhibitor seems to support the reactive site loop (primary contact region). Steric homology for the two contact regions is so high between the inhibitors ofStreptomyces subtilisin inhibitor family and those of pancreatic secretory trypsin inhibitor-ovomucoid inhibitor family that it seems to favour a divergent evolution and to support the general notion as to the relationship of prokaryotic and eukaryotic genes put forwarded by Doolittle(Nature (London),272, 581, 1978). 相似文献
9.
Michael Younga Adrian P. Gee Michael D. P. Boyleb Michael J. P. Lawman Kathy L. Mungera 《Molecular and cellular biochemistry》1985,66(1):65-69
Summary High molecular weight mouse nerve growth factor(H M W-NGF), in addition to its effects on certain neural elements, is also chemotactic for human polymorphonuclear leukocytes. One of the subunits of H M W-NGF is a protease of the serine family and its active site contains a serine residue and a closely-neighboring histidine residue that are both essential for proteolysis. Elimination of enzyme activity by irreversibly blocking the single serine has no effect on leukotaxis, but blocking the histidine abolishes leukotaxis. These results suggest the possibility that part of the proteolytic active site of this enzyme may have evolved to perform more than one, completely different, biologic function — proteolysis as well as nonproteolytically mediated chemotaxis.Abbreviations HMW-NGF
mouse submandibular gland nerve growth factor, purified as in Ref. 1
- DFP
diisopropyl-phosphofluoridate
- DIP-NGF
diisopropyl-phosphoryl-NGF; phe-pro-arg-CH2C1, D-phenylalanyl-L-propyl-L-argininyl chloromethyl ketone; TLCK, N-p-tosyl-L-lysine chloromethyl ketone
- TAME
N-p-tosyl L-arginine methyl ester
- EDTA
ethylenediamine tetraacetic acid 相似文献
10.
Operation of the glycolate pathway in isolated bundle sheath (BS) strands of two C4 species was demonstrated from 14C incorporation into two intermediates, glycine and serine, under conditions favourable for photorespiratory activity. Isolated BS strands fixing 14CO2 under light at physiological rates incorporate respectively 3% (Zea mays L., cv. INRA 258) and 7% (Panicum maximum Jacq.) of total 14C fixed into glycine + serine, at low bicarbonate levels (less than the Km for CO2 fixation, 0.8 mM). Higher bicarbonate concentrations depressed the percentage of incorporation into the two amino acids. No labelling was observed in the absence of added glutamate. Oxygen was required for glycine + serine labelling, since 14C incorporation into glycine was largely depressed by argon flushing, and labelling of the two amino acids was nearly suppressed by the addition of the strong reductant, dithionite, especially in maize. Two inhibitors of the glycolate pathway were tested. With α-hydroxypyridine-methanesulfonic acid, an inhibitor of glycolate oxidase, labelling of glycine and serine remained minimal whereas glycolate was accumulated. Isoniazid, an inhibitor of the transformation of glycine to serine induced a 50% increased labelling of glycine in maize BS, and a large decrease in serine labelling. In Panicum, the increase in [14C]-glycine was 90%. These results suggest that the pathway glycolate → glycine → serine operates in these plants. However, leakage of metabolites occurs in BS cells, especially in maize and a large part of newly formed glycolate, glycine and serine is exported out of the cells. Operation of ribulose-1,5-bisphosphate oxygenase activity in competition with ribulose-1,5-bisphosphate carboxylase is demonstrated by the lowering of total 14CO2 fixation when O2 is increased at low bicarbonate concentration. An interesting feature observed in maize BS, at low bicarbonate concentration, was an increase in ribulose-1,5-bisphosphate labelling when the O2 level was decreased. This was accompanied by an increase in CO2 fixation. This could indicate an increased rate in synthesis of ribulose-1,5-bisphosphate (which accumulated) due to a stimulation of ATP synthesis by cyclic photophosphorylation under anaerobic conditions. 相似文献