Membrane Binding and Homodimerization of Atg16 Via Two Distinct Protein Regions is Essential for Autophagy in Yeast

Macroautophagy is a bulk degradation mechanism in eukaryotic cells. Efficiency of an essential step of this process in yeast, Atg8 lipidation, relies on the presence of Atg16, a subunit of the Atg12–Atg5-Atg16 complex acting as the E3-like enzyme in the ubiquitination-like reaction. A current view on the functional structure of Atg16 in the yeast S. cerevisiae comes from the two crystal structures that reveal the Atg5-interacting α-helix linked via a flexible linker to another α-helix of Atg16, which then assembles into a homodimer. This view does not explain the results of previous in vitro studies revealing Atg16-dependent deformations of membranes and liposome-binding of the Atg12–Atg5 conjugate upon addition of Atg16. Here we show that Atg16 acts as both a homodimerizing and peripheral membrane-binding polypeptide. These two characteristics are imposed by the two distinct regions that are disordered in the nascent protein. Atg16 binds to membranes in vivo via the amphipathic α-helix (amino acid residues 113–131) that has a coiled-coil-like propensity and a strong hydrophobic face for insertion into the membrane. The other protein region (residues 64–99) possesses a coiled-coil propensity, but not amphipathicity, and is dispensable for membrane anchoring of Atg16. This region acts as a Leu-zipper essential for formation of the Atg16 homodimer. Mutagenic disruption in either of these two distinct domains renders Atg16 proteins that, in contrast to wild type, completely fail to rescue the autophagy-defective phenotype of atg16Δ cells. Together, the results of this study yield a model for the molecular mechanism of Atg16 function in macroautophagy.     

Present and future needs for algae and algal products

A review of the present needs, mainly for production of phycocolloids and food condiments, is given. Supply and demand vary from balanced, in some, to disproportionate in other fields. World-wide shortage of agarophytes contrasts with huge, unexploited beds of brown seaweeds.In future, partly conflicting trends will decide the needs for algae and algal products. Growth in the human population, pollution, overexploitation of land and lack of freshwater will encourage use of seaweeds. Modern biotechnology will favour this development, but will also be a serious threat to industrial exploitation of seaweeds. Future uses of marine algae will be decisively influenced by the effort put into and the results coming out of seaweed research.     

Lipid composition of adult Foleyella agamae

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& Obiamiwe B. A. 1986. Lipid composition of adult Foleyella agamae. International Journal for Parasitology 16: 655–657. The lipid and fatty acid composition of the filarial parasite Foleyella agamae were investigated. Total lipids accounted for 7.05% of the parasite fresh weight. Neutral lipids comprised 56.34% of the total and polar lipids 43.66%. The major lipid classes detected include sterol esters, cholesterol, phosphatidyl choline and phosphatidyl ethanolamine. Fatty acids varying in chain length from 10 carbon atoms through 20 carbon atoms were identified in the total lipid extract. The 18 carbon fatty acids formed the predominant components. The 20 carbon fatty acids were confined to the polar lipds.     

Structure and polymorphism of bipolar isopranyl ether lipids from archaebacteria

We describe in this work the structure and polymorphism of a variety of lipids extracted from Sulfolobus solfataricus, an extreme thermoacidophilic archaebacterium growing at about 85 °C and pH 2. These lipids are quite different from the usual fatty acid lipids of eukaryotes and prokaryotes: each molecule consists of two C₄₀ ω-ω′ biphytanyl residues (with 0 to 4 cyclopentane groups per residue), ether linked at both ends to two (variably substituted) glycerol or nonitol groups. Four lipid preparations were studied; the total and the polar lipid extracts, and two hydrolytic fractions, the symmetric glycerol dialkyl glycerol tetraether and the asymmetric glycerol dialkyl nonitol tetraether, as a function of water content and temperature, using X-ray scattering techniques. The main conclusions from the study of the four lipid preparations can be summarized as follows. (1) As with other lipids, a remarkable number and variety of phases are observed over a temperature-concentration range close to “physiological” conditions. The possibility is discussed that this polymorphism reflects a fundamental property of lipids, closely related to their physiological rôle. (2) As in other lipids, two types of chain conformations are observed: a disordered one (type α) at high temperature; at lower temperature, a more ordered packing of stiff chains, all parallel to each other (type β′). At temperatures and degrees of hydration approaching the conditions prevailing in the living cell, the conformation is of type α. (3) In all the phases with chains in the α conformation, the unsubstituted glycerol headgroups, whose concentration is high in these lipids, segregate in the hydrocarbon matrix, away from the other polar groups. This property may have interesting biological consequences: for example, the chains of a fraction of the bipolar lipid molecules can span hydrocarbon gaps as wide as 75 Å. (4) Two cubic phases are observed in the total and the polar lipid extracts, which display a remarkable degree of metastability, most unusual in lipid phase transitions involving structures with chains in the α conformation. This phenomenon can be explained by the interplay of the physical structure of the cubic phases (the two contain two intertwined and unconnected three-dimensional networks of rods) and the chemical structure of the lipid molecules: the two headgroups of most molecules being anchored on each of the two networks of rods, the migration of the lipid molecules is hindered by the two independent diffusion processes and by the entanglement of the chains. The possibility is discussed that this phenomenon may reflect an evolutionary response to a challenge of the natural habitat of these archaebacteria.     

The species of Ceramium (Ceramiaceae,Rhodophyta) around Taiwan

A taxonomic study was recently carried out on the species of Ceramium occurring around Taiwan. One hundred and fifty-one collections were made from January 1993 through spring 1994 at 75 sites distributed around the island. A total of thirteen species were found, including three for which names cannot currently be assigned: Ceramium aduncum, C. ciliatum, C. cimbricum, C. cliftonianum, C. flaccidum, C. gracillimum var. byssoideum, C. mazatlanense, C. nakamurai, C. paniculatum, C. tenerrimum and unidentified species 1, 2 and 3. Among these are three new records for Taiwan, C. cimbricum, C. cliftonianum, and C. mazatlanense. This paper summarizes the taxonomic characters of these species and presents a key for their identification. Distribution records of all 42 species reported from the tropical western Pacific are compared. This report is the first detailed record of the genus for Taiwan.     

Cell division of binuclear cells induced by caffeine: Spindle organization and determination of division plane

Synchronously dividing binuclear cells were induced in root tips ofTriticum turgidum by caffeine treatment. Spindle and other microtubular configurations of such cells were studied using tubulin immunofluorescence and electron microscopy. The binuclear cells developed one, two or three preprophase microtubule bands longitudinally, transversely or rarely in a cross configuration. During the mitotic entry binuclear cells formed prophase spindles separately around each nucleus. When the nuclei were located fairly apart, their spindle structures developed independently throughout all mitotic phases. But when the nuclei were located closely together their metaphase and anaphase spindles shared a common polar region. However, the two spindles in such cells retained their functional autonomy. They display structurally independent minipoles in the common polar region. After anaphase the neighbouring nonsister chromosome groups of nuclei divided by a common polar region come to lie close together and in telophase, become enclosed by a common nuclear envelope. During cytokinesis of binuclear cells cell plates were formed only between sister nuclei. These cell plates may develop normally or may curve or branch giving rise to aberrant daughter cell walls. The peculiar mode of spindle and spindle polar region organization of binuclear cells and determination of the division plane in them are discussed.     

Inhibition by 2,4-D of somatic embryogenesis in carrot as explored by its reversal by difluoromethylornithine

The development of somatic embryos is, in many plants, inhibited by 2,4-dichlorophenoxyacetic acid (2,4-D) and other auxins. The finding that difluoromethylornithine (DFMO) can counteract this inhibition has been used to test some of the hypotheses for the mechanism of inhibition.
Inhibition of somatic embryogenesis in carrot ( Daucus carota L.) by exogenous ethylene (from ethephon), antioxidants (ascorbic acid and glutathione), ethanol/acetaldehyde and abscisic acid was not counteracted by DFMO, indicating that the inhibitory effect of 2,4-D is not manifest through the formation of these compounds. Embryogenesis was abolished by micromolar concentrations of the polar auxin transport inhibitors 2, 3, 5-triiodobenzoic acid (TIBA), N-1-naphthylphthalamic acid (NPA) and 9-hydroxyfluorene-9-carboxylic acid (HFCA). This inhibition was counteracted to a considerable extent by DFMO. Inhibition by relatively high concentrations of the antiauxin 2-( p -chlorophenoxy)-isobutyric acid (CPIB), which does not affect polar auxin transport, was in contrast not counteracted by DFMO. These findings indicate that exogenous auxins may inhibit embryogenesis by interfering with the ability of postglobular embryos to set up internal auxin gradients necessary for polarized growth.     

中国蜡梅属植物过氧化物同工酶的研究

采用聚丙烯酰胺凝胶电泳系统,进行了蜡梅属8种植物过氧化物同工酶的研究。结果发现：该属8种植物的酶谱差异显著,每个种均有其特征酶谱。根据其种的酶谱酶带数目、Rf、宽度及其活性强弱的不同,可将各个种加以区别,但不支持保康蜡梅和突托蜡梅作为独立种的存在,也不支持蜡梅属分为蜡梅组和新蜡梅组的观点。同时,采用排序方法对蜡梅属8种植物酶谱的相似程度进行排序结果发现：与该属8种植物酶谱分类相吻合,并从分子水平上论证了它们的亲缘关系,即保康蜡梅为蜡梅的种内变异,以作蜡梅栽培品种处理;突托蜡梅作为浙江蜡梅的变种为佳,从而为蜡梅属植物种群的合理划分,提出了新的依据和手段。