Assay of glutamine phosphoribosylpyrophosphate amidotransferase using [1-C]phosphoribosylpyrophosphate

Glutamine phosphoribosylpyrophosphate amidotransferase (EC 2.4.2.14) catalyzes the transfer of the amide group of glutamine to 5-phospho-α- -ribose-1-pyrophosphate. It is the first enzyme committed to the synthesis of purines by the de novo pathway. Previous assays of enzyme activity have either measured the phosphoribosylpyrophosphate-dependent disappearance of radioactive glutamine or have linked this reaction to subsequent steps in the purine pathway. A new assay for activity of the enzyme by directly measuring the synthesis of the product of the reaction, 5-β-phosphoribosyl-1-amine, using [1-¹⁴C]phosphoribosylpyrophosphate as substrate is described. Substrate and product are separated by thin-layer chromatography and identified by autoradiography. Glutamine or ammonia may be used as substrates; the apparent K_m values of the human lymphoblast enzyme are 0.46 m for glutamine and 0.71 m for ammonia. GMP is a considerably more potent inhibitor of the human lymphoblast enzyme than is AMP; 6-diazo-5-oxo- -norleucine inhibits only glutamine-dependent activity and has no effect on ammonia-dependent activity.     

Carbamoyl phosphate synthetase: a tunnel runs through it

The direct transfer of metabolites from one protein to another in a biochemical pathway or between one active site and another within a single enzyme has been described as substrate channeling. The first structural visualization of such a phenomenon was provided by the X-ray crystallographic analysis of tryptophan synthase, in which a tunnel of approximately 25 Å in length was observed. The recently determined three-dimensional structure of carbamoyl phosphate synthetase sets a new long distance record in that the three active sites are separated by nearly 100 Å.     

L'adeninephosphoribosyltransferase des pousses de topinambour Helianthus tuberosus

An extract from Jerusalem artichoke shoots exhibited important adeninephosphoribosyltransferase activity. Only partial purification was possible because of the great instability of the enzyme. Phosphate ions and thiol reducing substances were necessary to stabilize it. The optimal temperature and pH were 40–45° and 5.5 to 6.5. The enzyme showed an absolute requirement for divalent cation: Mn²⁺ > Mg²⁺ = CO²⁺ = Zn²⁺ ? Ca²⁺. Kinetic studies gave K_m values of 6.4 × 10^?1 M for phosphoribosylpyrophosphate (PRPP) and 5.5 × 10^?6 M for adenine. AMP exercised a strong product inhibition, competitive towards PRPP (K_i = 10^?4 M). Inhibition by phosphate and pyrophosphate ions was also observed. The results suggested that the adeninephosphoribosyltransferase of Helianthus tuberosus has a key role in the purine salvage pathway.     

离子对反相HPLC测定小鼠骨髓BFU-E、CFU-E中PRPP合成酶活性

采用离子对反相高效液相色谱法 ( IPr HPLC)的单液等度洗脱 ,测定了小鼠骨髓红系爆增性集落形成单位 ( BFU- Es)与红系集落形成单位 ( CFU- Es)的 PRPP合成酶活性 .方法学研究表明 ,加入离子对试剂硫酸氢四丁基铵 ( TBAHS)后 ,ADP谱峰分离完全 ,其反应增加量易于计算 .本法的批内变异系数平均值为 - 2 .30 %～ - 1 .0 6%与 1 .0 6%～ 2 .30 % ,平均相对偏差为 0 .81 %～ 1 .74% ,回收率为 93.9%～ 98.5% ,能达到操作简便、灵敏和准确的要求 .采用本法测得 2 0只正常昆明小鼠的 BFU- E和 CFU- E中该酶活性各为 ( 0 .563± 0 .0 2 7)μmol/( min·g· m L- 1)与 ( 0 .41 6± 0 .0 2 6) μmol/( min·g·m L- 1) .     

A study in molecular contingency: glutamine phosphoribosylpyrophosphate amidotransferase is a promiscuous and evolvable phosphoribosylanthranilate isomerase

The prevalence of paralogous enzymes implies that novel catalytic functions can evolve on preexisting protein scaffolds. The weak secondary activities of proteins, which reflect catalytic promiscuity and substrate ambiguity, are plausible starting points for this evolutionary process. In this study, we observed the emergence of a new enzyme from the ASKA (A Complete Set of E. coli K-12 ORF Archive) collection of Escherichia coli open reading frames. The overexpression of (His)₆-tagged glutamine phosphoribosylpyrophosphate amidotransferase (PurF) unexpectedly rescued a ΔtrpF E. coli strain from starvation on minimal media. The wild-type PurF and TrpF enzymes are unrelated in sequence, tertiary structure and catalytic mechanism. The promiscuous phosphoribosylanthranilate isomerase activity of the ASKA PurF variant apparently stems from a preexisting affinity for phosphoribosylated substrates. The relative fitness of the (His)₆-PurF/ΔtrpF strain was improved 4.8-fold to nearly wild-type levels by random mutagenesis of purF and genetic selection. The evolved and ancestral PurF proteins were purified and reacted with phosphoribosylanthranilate in vitro. The best evolvant (k_cat/K_M = 0.3 s^− 1 M^− 1) was ∼ 25-fold more efficient than its ancestor but > 10⁷-fold less efficient than the wild-type phosphoribosylanthranilate isomerase. These observations demonstrate in quantitative terms that the weak secondary activities of promiscuous enzymes can dramatically improve the fitness of contemporary organisms.     

谷氨酰胺磷酸核糖焦磷酸转酰胺酶研究进展

谷氨酰胺磷酸核糖焦磷酸转酰胺酶是生物．体内嘌呤产物合成途径的关键酶,负责催化全合成途径的第一步反应。肌苷属于嘌呤核苷,是食品和医药行业广泛应用的重要产品。谷氨酰胺磷酸核糖焦磷酸转酰胺酶在肌苷的生物合成途径中起重要调节作用,对其深入研究将有助于提高肌苷的产量,对工业化生产有重大意义。本从谷氨酰胺磷酸核糖焦磷酸转酰胺酶的属性、功能、结构和基因表达与调控方面对其做了介绍,为肌苷产量的提高工作奠定了基础。     

Implications of secondary structure prediction and amino acid sequence comparison of class I and class II phosphoribosyl diphosphate synthases on catalysis, regulation, and quaternary structure

Spinach 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP) synthase isozyme 4 was synthesized in Escherichia coli and purified to near homogeneity. The activity of the enzyme is independent of P(i); it is inhibited by ADP in a competitive manner, indicating a lack of an allosteric site; and it accepts ATP, dATP, GTP, CTP, and UTP as diphosphoryl donors. All of these properties are characteristic for class II PRPP synthases. K(m) values for ATP and ribose 5-phosphate are 77 and 48 microM, respectively. Gel filtration reveals a molecular mass of the native enzyme of approximately 110 kD, which is consistent with a homotrimer. Secondary structure prediction shows that spinach PRPP synthase isozyme 4 has a general folding similar to that of Bacillus subtilis class I PRPP synthase, for which the three-dimensional structure has been solved, as the position and extent of helices and beta-sheets of the two enzymes are essentially conserved. Amino acid sequence comparison reveals that residues of class I PRPP synthases interacting with allosteric inhibitors are not conserved in class II PRPP synthases. Similarly, residues important for oligomerization of the B. subtilis enzyme show little conservation in the spinach enzyme. In contrast, residues of the active site of B. subtilis PRPP synthase show extensive conservation in spinach PRPP synthase isozyme 4.     

Dilution of hypoxanthine-guanine phosphoribosyl transferase and other factors affecting the frequency of 6-thioguanine resistance in Chinese hamster lung cells.

Factors influencing the frequency of thioguanine resistant mutations were examined in Chinese hamster lung cells damaged with a carcinogen, N-acetoxy-2-acetyl aminofluorene. Factors such as inoculum density, expression time, and concentration of selective agent were found to have a profound effect on the mutation frequency.Over a range of doses, a longer expression time is required for mutant cells from a more damaged population to reach their maximum frequency. In order to investigate the elements involved in this phenomenon, the increment in the plating efficiency of treated cells as a function of expression time, spontaneous mutation rate per cell per generation, viability of mutant as well as wild type cells, and half life of HGPRTase were evaluated.There was an observed relationship between induced mutation frequency and plating efficiency of treated cells. When treated cells had recovered from effects of the treatment and arrived at the normal level of plating efficiency, they also yielded the maximum frequency of mutations.The estimated mutation rate was 5.5 × 10^?8 per cell per generation. This number is too small to account for the increment in mutation frequency with the increase in the expression time. The mutation frequency of spontaneous origin was 4 × 10^?6 and that of induction of 10^?5 M NA-AAF was 10^?4. Lower growth rates of mutant cells cannot explain this increase in the number of mutants recovered, either.Continuous diminution in the level of HGPRTase, at 35% daily, interpreted as an important factor responsible for the recovery of mutation frequency during expression time, was observed in non-dividing cells. None of a large number of mutants sampled from those isolated had HGRPT activity. This indicates that they are true mutants and are not a result of phenocopy. Only cells completely deficient in HGPRT activity are recovered in TG selection medium. It is suggested, therefore, that this cell line is suitable for mutagenicity testing in the induction of mutation at the HGPRT locus.