Contrasted histories of organelle and nuclear genomes underlying physiological diversification in a grass species

C₄ photosynthesis evolved multiple times independently in angiosperms, but most origins are relatively old so that the early events linked to photosynthetic diversification are blurred. The grass Alloteropsis semialata is an exception, as this species encompasses C₄ and non-C₄ populations. Using phylogenomics and population genomics, we infer the history of dispersal and secondary gene flow before, during and after photosynthetic divergence in A. semialata. We further analyse the genome composition of individuals with varied ploidy levels to establish the origins of polyploids in this species. Detailed organelle phylogenies indicate limited seed dispersal within the mountainous region of origin and the emergence of a C₄ lineage after dispersal to warmer areas of lower elevation. Nuclear genome analyses highlight repeated secondary gene flow. In particular, the nuclear genome associated with the C₄ phenotype was swept into a distantly related maternal lineage probably via unidirectional pollen flow. Multiple intraspecific allopolyploidy events mediated additional secondary genetic exchanges between photosynthetic types. Overall, our results show that limited dispersal and isolation allowed lineage divergence, with photosynthetic innovation happening after migration to new environments, and pollen-mediated gene flow led to the rapid spread of the derived C₄ physiology away from its region of origin.     

Soils and vegetation of Angai forest: ecological insights from a participatory survey in South Eastern Tanzania

Soils and vegetation of a woodland in South Eastern Tanzania were studied in support of a project fostering community participation in the management of a proposed forest reserve. In nine sites within an area of 500 km², soils were characterized, frequency of occurrence of woody species was assessed and diameter at breast height of timber species recorded. Villagers identified 133 species of which only 56% were scientifically identified. However, as ordination axes derived from the complete data set were highly correlated with those derived from the restricted data set, the latter could be used. On the undulating plains, deep, sandy soils (Hypoluvic Arenosols, Profondic and Arenic Luvisols) occurred low in organic carbon, exchangeable bases and extractable aluminium content. Most common canopy species were Brachystegia spiciformis/B. boehmii and Pterocarpus angolensis. On the dissected plains on shallow, clayey soils (Leptic Cambisols) with higher organic carbon, exchangeable bases and extractable aluminium content, Acacia nigrescens and Markhamia spp. were the most common tree species. On deeper, fertile clayey soils (Profondic Lixisols and Chromic Phaeozems) vegetation consisted of species found in the two vegetation groups. Pterocarpus angolensis and Pericopsis angolensis were the only valuable timber species commonly found, most frequently on the undulating plains. As soils of this area are unfavourable for agriculture, it seems sensible to set this area aside as a forest reserve.     

Changes in miombo woodland cover in and around Sengwa Wildlife Research Area, Zimbabwe, in relation to elephants and fire

One of the consequences of impacts of elephants and fire on woodlands is a change in woody cover, which often results in major challenges for wildlife managers. Changes in miombo woodland cover in and around Sengwa Wildlife Research Area (SWRA) between 1958 and 1996 were quantified by analyzing aerial photographs. Woody cover in SWRA decreazed from 95.2% in 1958 to 68.2% in 1996, with a lowest mean of 62.9% in 1983. The annual absolute rate of woody cover change in SWRA increazed from ?1.1% per annum between 1958 and 1964 to a recovery of 1.6% per annum between 1993 and 1996, while the annual relative rate increazed from ?1.1% per annum between 1958 and 1964 to 3.3% per annum between 1993 and 1996. There was a strong negative correlation between elephant densities and woody cover in SWRA, suggesting that loss of woody cover was mainly due to elephants. Woodland recovery after 1983 was due to reductions in elephant populations through legal and illegal off‐take and reductions in fire frequency. Surrounding areas experienced less woody cover losses than SWRA, mainly due to tree removal by locals whose densities increazed after the eradication of tsetse fly in the 1970s.     

Do consumer‐mediated negative effects on plant establishment outweigh the positive effects of a nurse plant?

Many studies demonstrated the importance of facilitative effect by nurse plant on seedling establishment. Few studies evaluated the negative effects of consumers on plant establishment under nurse plants by dealing with them during multiple demographic processes. We investigated the balance between the facilitative effect and negative effects of consumers during multiple demographic processes in Malawi in southeastern Africa. We chose Ficus natalensis as a nurse plant and compared it with three other microsites in tropical woodlands: Brachystegia floribunda (a dominant woodland species), Uapaca kirkiana (a woodland species), and a treeless site. We quantified the seed rain, postdispersal seed predation, germination, and seedling survival of Syzygium guineense ssp. afromontanum (a common forest species). Within each microsite, we quantified the overall probability of recruitment. We also measured seedling abundance of S. guineense ssp. afromontanum. We found that Ficus natalensis exerted both positive and negative impacts on the establishment of S. guineense ssp. afromontanum. Ficus natalensis facilitated seed deposition, seed germination, and seedling survival. On the other hand, seed removal at postdispersal stage was highest under F. natalensis. Interestingly, B. floribunda also had positive effects on germination and seedling survival, but not on seed deposition. When we excluded the seed arrival stage from our estimation of the recruitment probability, the highest value was found under B. floribunda, not under F. natalensis. When we included the seed arrival stage, however, the order of recruitment probability between F. natalensis and B. floribunda was reversed. The probability was one order of magnitude higher under F. natalensis than under B. floribunda. Our estimation of the probability which included the seed arrival stage was consistent with natural patterns of S. guineense ssp. afromontanum establishment. Despite the presence of opposite effects, the net effects of F. natalensis on S. guineense ssp. afromontanum recruitment in tropical woodlands can be positive.     

Spatial structure and the effects of host and soil environments on communities of ectomycorrhizal fungi in wooded savannas and rain forests of Continental Africa and Madagascar

Mycorrhizal fungi play a key role in mineral nutrition of terrestrial plants, but the factors affecting natural distribution, diversity and community composition of particularly tropical fungi remain poorly understood. This study addresses shifts in community structure and species frequency of ectomycorrhizal (EcM) fungi in relation to host taxa, soil depth and spatial structure in four contrasting African ecosystems. We used the rDNA and plastid trnL intron sequence analysis for identification of fungi and host plants, respectively. By partitioning out spatial autocorrelation in plant and fungal distribution, we suggest that African EcM fungal communities are little structured by soil horizon and host at the plant species and family levels. These findings contrast with patterns of vegetation in these forests and EcM fungal communities in other tropical and temperate ecosystems. The low level of host preference indirectly supports an earlier hypothesis that pioneer Phyllanthaceae may facilitate the establishment of late successional Fabaceae and potentially other EcM host trees by providing compatible fungal inoculum in deforested and naturally disturbed ecosystems of tropical Africa.     

Fruit Production and Seed Predation in Two Miombo Woodland Trees in Zambia

During a six year period (1990–1995) fruiting frequency among marked trees and seed production and predispersal predation by beetle larvae of lsoberlinia angolensis and Julbernardia globiflora of the Leguminosae family and Caesalpinoideae subfamily were studied at two dry miombo woodland sites in central Zambia. Fruit production varied from year to year and was not related to annual rainfall. On average I. angolensis trees fruited once every two years while J. globiflora trees fruited once every two and one-half years. Number of fruits per tree was correlated with tree size for both species. In a peak year fruit biomass represented two to four percent of total above ground biomass but for J. globiflora about 5.5 and 4.5 percent of nitrogen and potassium, respectively, were in fruits compared to 0.6 and 1.8 percent for I. angolensis. The lower fruiting frequency in J. globifora was probably related to the depletion of N reserves during a fruiting year which required a longer replenishment period than in I. angolensis. Predispersal seed predation was low for J. globiflora (10%) and very high in I. angolensis (65–85%) and for the latter species predation rate increased from August to November 1991 and significant variations were observed among years and pod types. Seed predation rate was lowest in a peak fruiting year and this observation provides support for the satiation hypothesis. The results of the study also suggest that I. angolensis and J. globiflora may have different regeneration strategies although reproductive allocation in both species was within the range reported for other iteroparous plants.     

Productivity and carbon fluxes of tropical savannas

Aim (1) To estimate the local and global magnitude of carbon fluxes between savanna and the atmosphere, and to suggest the significance of savannas in the global carbon cycle. (2) To suggest the extent to which protection of savannas could contribute to a global carbon sequestration initiative. Location Tropical savanna ecosystems in Africa, Australia, India and South America. Methods A literature search was carried out using the ISI Web of Knowledge, and a compilation of extra data was obtained from other literature, including national reports accessed through the personal collections of the authors. Savanna is here defined as any tropical ecosystem containing grasses, including woodland and grassland types. From these data it was possible to estimate the fluxes of carbon dioxide between the entire savanna biome on a global scale. Results Tropical savannas can be remarkably productive, with a net primary productivity that ranges from 1 to 12 t C ha⁻¹ year⁻¹. The lower values are found in the arid and semi‐arid savannas occurring in extensive regions of Africa, Australia and South America. The global average of the cases reviewed here was 7.2 t C ha⁻¹ year⁻¹. The carbon sequestration rate (net ecosystem productivity) may average 0.14 t C ha⁻¹ year⁻¹ or 0.39 Gt C year⁻¹. If savannas were to be protected from fire and grazing, most of them would accumulate substantial carbon and the sink would be larger. Savannas are under anthropogenic pressure, but this has been much less publicized than deforestation in the rain forest biome. The rate of loss is not well established, but may exceed 1% per year, approximately twice as fast as that of rain forests. Globally, this is likely to constitute a flux to the atmosphere that is at least as large as that arising from deforestation of the rain forest. Main conclusions The current rate of loss impacts appreciably on the global carbon balance. There is considerable scope for using many of the savannas as sites for carbon sequestration, by simply protecting them from burning and grazing, and permitting them to increase in stature and carbon content over periods of several decades.     

Nitrous oxide fluxes from savanna (miombo) woodlands in Zimbabwe

Aim We test the hypothesis that land use and climate are important controls of nitrous oxide (N₂O) emissions from savanna ecosystems, and that these emissions can be represented by a mechanistic model of carbon (C) and nitrogen (N) transformations. Location Miombo woodlands in Zimbabwe are part of widespread woody savanna formations in southern and central Africa that cover more than 2.7 million km². The rainfall in this region is around 800 mm and is concentrated in the period between November and March. Methods Losses of N₂O were measured along transects in two field areas using static chambers over a period of 1 year. The vegetation in both areas was dominated by Julbernardia globiflora and Brachystegia spiciformis, but had differing management systems (burned and unburned), soil properties and site characteristics (slope and drainage). The effects of simulated rainfall and fertilizer additions were studied in laboratory incubations. Results Patterns of N₂O emissions were strongly linked to rainfall. The highest fluxes at both sites were measured within 18 days of the onset of the first rains in November, with fluxes of up to 42 μg N m^?2 h^?1. During the dry season, fluxes were lower, but a large proportion (R² values between 0.8 and 0.95, P < 0.001) of the N₂O flux could be predicted by variations in soil moisture. Soil columns were set up in the laboratory to which simulated rainwater was added, and the amounts and timing of rainwater addition were varied. Losses of N₂O were highest within the first week of the laboratory study. Altering the amount of rainwater addition did not significantly affect N₂O loss; however, a continuous addition of water resulted in higher losses of N₂O (up to 79 μg N m^?2 h^?1) than periodic addition of the same amount. A model (denitrification–decomposition) was used to simulate N₂O release over a 12 month period, using meteorological data recorded in the vicinity of the field site. The simulations and field data suggest that nitrification was the main process responsible for N₂O release during the dry season but that denitrification was more important during the wet season. Main conclusions The release of N₂O from dryland savannas was shown to constitute an important nutrient flux, and emissions were strongly linked to patterns of rainfall; however, there was evidence to suggest that the magnitude of fluxes is also influenced locally by differences in soil organic matter concentration and drainage.     

Carbon storage,structure and composition of miombo woodlands in Tanzania’s Eastern Arc Mountains

We determine the aboveground biomass and carbon storage (ABGC) of trees and the herbaceous layer in miombo woodland in the Eastern Arc Mountains (EAM) of Tanzania. In four 1‐ha sample plots in Nyanganje and Kitonga Forests, we measured all trees ≥10 cm diameter alongside height and wood mass density. The plots contained an average of 20 tree species ha^?1 (range 11–29) and 344 stems ha^?1 (range 281–382) with Shannon diversity values of 1.05 and 1.25, respectively. We weighted nine previously published woody savannah allometric models based on whether: (i) the model was derived from the same geographical region; (ii) the model included tree height/wood mass density in addition to stem diameter; and (iii) sample size was used to fit the model. The weighted mean ABGC storage from the nine models range from 13.5 ± 2 to 29.8 ± 5 Mg ha^?1. Measured ABGC storage in the herbaceous layer, using the wet combustion method, adds 0.55 ± 0.02 Mg C ha^?1. Estimates suggest that EAM miombo woodlands store a range of 13–30 Mg ha^?1 of carbon. Although the estimates suggest that miombo woodlands store significant quantities of carbon, caution is required as this is the first estimate based on in situ data.