A new device for collection of interstitial water from wetland sediments

A sampler for collection of interstitial water from wetland sediments is described. It differs from other sampling devices because it does not have to be filled with solution to facilitate diffusion, it does not have to be removed from the wetland to collect samples, and it can be used to draw repeated samples over time from identical locations. The device facilitates in situ measurement of a wide range of abiotic parameters such as electrical conductivity, redox potential, and pH in wetland sediments. The device has application in ecological investigations of sediment-borne wildlife diseases, studies of benthic invertebrates, measurement of nutrient exchange, and other aspects of wetland ecology.     

Immunoblotting of mite aeroallergens collected with an indoor Burkard air sampler

We examined the kinetics of airborne levels of mite allergen particles in a house by combined use of an indoor Burkard air sampler and immunoblotting. Airborne mite allergens collected on the Burkard sampling tape were transferred onto a nitrocellulose membrane, reacted with mouse monoclonal anti-mite allergen (Der pI) antibody, then treated with alkaline phosphatase conjugated anti-mouse IgG. Finally, the blotted allergen on the membrane was reacted with BCIP/NBT phosphatase, and purple spots visible by the naked eye were produced. The shape of the spots was observed under a microscope, and the spot area was measured by an image processor. This technique might be useful for analyzing the behavior of airborne allergen particles in indoor environments.     

Chironomid pupal exuviae and larvae of two storage reservoirs in The Netherlands

For three years chironomid larvae were collected bimonthly with a grab sampler in two deep storage reservoirs in The Netherlands. Chironomid pupal exuviae were collected monthly, from April to November, with a handnet. Net samples yielded more taxa than grab samples. The taxa found in net samples originated from more habitats, than taxa found in grab samples. The relative contribution of Orthocladiinae was much larger in net samples. Based on the results obtained in the two reservoirs, some advantages and disadvantages of both sampling methods are discussed.     

Evaluation of a standpipe corer for sampling aquatic interstitial biotopes

The relative efficiencies of two sizes of a standpipe corer were evaluated. The size composition of the gravel sampled by the corer was very similar to that (below the opening size of the core chamber) of the streambed. The small corer (25 cm³ sample size) produced a mean overestimate of total numbers of only 19% even in highly heterogeneous gravels. Most of the taxa commonly in the substrates sampled did not escape from the corer. A few rare taxa were consistently over- or under-estimated and possible reasons for this are discussed.     

A portable pump sampler for lotic periphyton

A sampling technique for collecting lotic periphyton on sedimentary substrates using a peristaltic pump is described. Quantitative samples of periphyton standing crop and colonization rate are collected by the same procedure. The technique eliminates human disturbance problems associated with floating artificial samplers by establishing permanent sampling sites directly on submerged substances.     

High-throughput Flow Cytometry Cell-based Assay to Detect Antibodies to N-Methyl-D-aspartate Receptor or Dopamine-2 Receptor in Human Serum

Over the recent years, antibodies against surface and conformational proteins involved in neurotransmission have been detected in autoimmune CNS diseases in children and adults. These antibodies have been used to guide diagnosis and treatment. Cell-based assays have improved the detection of antibodies in patient serum. They are based on the surface expression of brain antigens on eukaryotic cells, which are then incubated with diluted patient sera followed by fluorochrome-conjugated secondary antibodies. After washing, secondary antibody binding is then analyzed by flow cytometry. Our group has developed a high-throughput flow cytometry live cell-based assay to reliably detect antibodies against specific neurotransmitter receptors. This flow cytometry method is straight forward, quantitative, efficient, and the use of a high-throughput sampler system allows for large patient cohorts to be easily assayed in a short space of time. Additionally, this cell-based assay can be easily adapted to detect antibodies to many different antigenic targets, both from the central nervous system and periphery. Discovering additional novel antibody biomarkers will enable prompt and accurate diagnosis and improve treatment of immune-mediated disorders.     

Passive sampler for chlorinated pesticides in estuarine waters

ABSTRACT

Monitoring organic contaminants in the marine environment and identifying their bioconcentration pathways presents great difficulties, as the analytical techniques require preconcentration steps that are time-consuming and tedious. Samplers have been developed that can concentrate extremely low levels of hydrophobic compounds, such as organochlorine pesticides, from water bodies, for direct analysis with minimal sample preparation. The passive samplers consist of polyethylene tubes filled with iso-octane that are deployed within weighted wire cages in estuaries and rivers for a period of three weeks. Hydrophobic compounds such as chlorinated pesticides are continuously partitioned from the water column into the solvent within the tube, providing an integrated sample over the duration of exposure. Pesticides are concentrated 200–300 fold in three weeks. Upon retrieval, the contents can be analysed directly by gas chromatography—electron capture detector (GC—ECD) or concentrated for analysis by gas chromatography-mass spectrometry (GC—MS). Laboratory experiments to determine the uptake rate of the compounds into the sampler enable the calculation of average water concentration over the sampling period. The samplers are cheap and easy to prepare, enabling their deployment in numerous sites over long periods if required. They are envisaged as being a quick and easy monitor for background levels of these contaminants within our waterways.     

Multiple imputation for multivariate data with missing and below-threshold measurements: time-series concentrations of pollutants in the Arctic

Many chemical and environmental data sets are complicated by the existence of fully missing values or censored values known to lie below detection thresholds. For example, week-long samples of airborne particulate matter were obtained at Alert, NWT, Canada, between 1980 and 1991, where some of the concentrations of 24 particulate constituents were coarsened in the sense of being either fully missing or below detection limits. To facilitate scientific analysis, it is appealing to create complete data by filling in missing values so that standard complete-data methods can be applied. We briefly review commonly used strategies for handling missing values and focus on the multiple-imputation approach, which generally leads to valid inferences when faced with missing data. Three statistical models are developed for multiply imputing the missing values of airborne particulate matter. We expect that these models are useful for creating multiple imputations in a variety of incomplete multivariate time series data sets.