Species‐specific TaqMan probes for simultaneous identification of (Gadus morhua L.), haddock (Melanogrammus aeglefinus L.) and whiting (Merlangius merlangus L.).

We report the development of a multiplex, single tube (TaqMan) PCR assay for the identification of three commercially important gadoid species, the cod (Gadus morhua L.), the haddock (Melanogrammus aeglefinus L.) and the whiting (Merlangius merlangus L.). The assay unambiguously identifies known adult tissue samples, and ethanol‐preserved eggs from all three species with greater than 98% accuracy, providing a powerful tool for the development of catch independent stock assessment methods, mapping of spawning sites and the detection of commercial fraud in the fishing and food production industries.     

Gape morphology of cod Gadus morhua L., haddock Melanogrammus aeglefinus (L.) and whiting Merlangius merlangus (L.) through metamorphosis from larvae to juveniles in the western Irish Sea

Variations in standard length ( L _S), gape size ( S _G) and jaw length ( L _J) were studied in larval and juvenile gadoids (cod Gadus morhua , haddock Melanogrammus aeglefinus and whiting Merlangius merlangus ) from 4 to 70 mm. The increase in S _G and L _J was not linear with respect to L _S. The relationship was best described by segmented regression lines in all three species, with an inflection point at c . 10·5 mm. The S _G and L _J increased more rapidly in relation to larval L _S for individuals smaller than this inflection point size. The rates of increase slowed significantly post-inflection, an effect more noticeable in S _G data compared to L _J data. In each case, the inflection point fell in the intermediate period of development between the larval and juvenile stages, which could be considered as metamorphosis. Published equations that have been used to predict S _G from L _J lead to the overestimation of gape. New relationships are presented, which may be used to predict S _G from measurements of either L _S or upper jaw length in cod, haddock and whiting.     

Stages of embryonic development in the Atlantic cod Gadus morhua

The early development of the Atlantic cod, Gadus morhua was studied from fertilization until first-feeding. Multiple families were reared at 7 degrees C and a developmental staging series was prepared using morphological landmarks visible with the light microscope. Stages were named rather than numbered to allow for future additions and broadly grouped into larger time intervals called periods. The most useful staging features were found to be initially cell number, and later in development, somite number. The mean cell cycle time for the first six cleavages was 135 min and the linear regression equation for development of somites(s) over time (t) was s = 0.29t - 18.14. The segmentation period began at 220 h postfertilization (hpf), and unlike some other teleosts, the addition of new somites continued throughout the majority of embryonic development, until just prior to hatching. Hatching occurred at 256 hpf, after which individuals remained motionless at the water's surface, undergoing negative phototaxis only after the first day posthatch. The first-feeding stage was reached at the end of the third day posthatch, subsequent to development of a functional jaw and hindgut. This staging series provides an essential baseline reference for future experiments involving developing cod embryos and for the aquaculture industry.     

Temporal variation and characterization of grunt sounds produced by Atlantic cod Gadus morhua and pollack Pollachius pollachius during the spawning season

Fine‐scale temporal patterning in grunt production and variation in grunt attributes in Atlantic cod Gadus morhua and pollack Pollachius pollachius was examined. Pollachius pollachius produced only a single sound type, the grunt, similar to that previously described for G. morhua. Sound production and egg production were correlated in P. pollachius but not in G. morhua. Only G. morhua displayed a strongly cyclical pattern, producing more grunts at night. Finer‐scale temporal patterning in grunt production was observed in both species which produced significantly fewer grunts following a period of high grunt production. These quieter periods lasted up to 45 min for P. pollachius and up to 1 h in G. morhua. Grunts were not always produced in isolation but organized into bouts in both species. Longer bouts were more frequent during periods of increased sound activity and were linked with changes in grunt characteristics including increased grunt duration, pulse duration and repetition period of each pulse combined with decreased dominant frequency. This study provides the first evidence of acoustic signalling being used by spawning P. pollachius and presents the most detailed analysis of the complexity of gadoid sound production.     

Patch exploitation by small gadoids: evidence for an asymmetric tidal effect

The attraction of small gadoids to physically disturbed seabed patches was examined experimentally using a modified remote operated vehicle. Video observations were made of simulated disturbances to investigate the influence of tidal state, time of day and current speed on the pattern of exploitation. Fish were more likely to be present in disturbed patches, and when present, occurred in significantly greater numbers than in control areas. However, this response was dependent on tidal state, occurring only on rising tides.     

TaqMan DNA technology confirms likely overestimation of cod (Gadus morhua L.) egg abundance in the Irish Sea: implications for the assessment of the cod stock and mapping of spawning areas using egg-based methods

Recent substantial declines in northeastern Atlantic cod stocks necessitate improved biological knowledge and the development of techniques to complement standard stock assessment methods (which largely depend on accurate commercial catch data). In 2003, an ichthyoplankton survey was undertaken in the Irish Sea and subsamples of 'cod-like' eggs were analysed using a TaqMan multiplex, PCR (polymerase chain reaction) assay (with specific probes for cod, haddock and whiting). The TaqMan method was readily applied to the large number of samples (n = 2770) generated during the survey and when combined with a manual DNA extraction protocol had a low failure rate of 6%. Of the early stage 'cod-like' eggs (1.2-1.75 mm diameter) positively identified: 34% were cod, 8% haddock and 58% whiting. As previous stock estimates based on egg surveys for Irish Sea cod assumed that the majority of 'cod-like' eggs were from cod, the TaqMan results confirm that there was probably substantial contamination by eggs of whiting and haddock that would have inflated estimates of the stock biomass.     

The influence of light on the diel vertical migration of young-of-the-year burbot Lota lota in Lake Constance

The diel vertical distribution of young-of-the-year (YOY) burbot Lota lota in the pelagic zone of Lake Constance was compared to light intensity at the surface and to the light intensity at their mean depth. Lota lota larvae inhabited the pelagic zone of Lake Constance from the beginning of May until the end of August. From early June, after the stratification of the water column, fish performed diel vertical migrations (DVM) between the hypolimnion and epilimnion. The amplitude of DVM increased constantly during the summer and reached 70 m by the end of August. Lota lota started their ascent to the surface after sunset and descended into the hypolimnion after sunrise. As the YOY fish grew from May to August, they experienced decreasing diel maximum light intensities: in May and early June L. lota spent the day at light intensities >40 W m⁻², but they never experienced light intensities >0·1 W m⁻² after the end of June. From this time, L. lota experienced the brightest light intensities during dusk and dawn, suggesting feeding opportunities at crepuscular hours. The present study implies, that YOY L. lota in the pelagic zone of Lake Constance increased their DVM amplitude during the summer to counteract a perceived predation risk related to body size and pigmentation.     

Gonadal development of triploid Atlantic Cod Gadus morhua

During their third and fourth years of life, triploid Atlantic cod Gadus morhua females exhibited diminished ovarian development at both macroscopic and microscopic levels, with significantly lower gonado-somatic indices (I(G)) and higher carcass yields (Y(C)) than diploid females during spawning periods. In contrast, diploid and triploid testes were indistinguishable through macroscopic and histological assessment. No significant differences were found in male I(G) or Y(C) in relation to ploidy, with the exception of a higher Y(C) for triploids during the first of the two monitored spawning seasons. As a result of suppressed oogenesis, triploid female G. morhua, but not triploid males, can be used to eliminate sexual maturation in this species and advance the development of the G. morhua aquaculture industry.     

Evidence for density-dependent growth in North Sea gadoids

The classical view on density-dependent growth is that an increase in population density heightens intraspecific competition for food, leading to reduced food intake and depressed growth. This paper summarizes the analysis of English Groundfish Survey, International Young Fish Survey and ICES Roundfish Working Group data for evidence of density-dependent growth of I- and II-group cod, haddock and whiting in the North Sea.
Within Roundfish areas there was a negative relationship between growth and density in some instances, but it was small. However, there were persistent differences in both growth rate and density between Roundfish areas. In all cases, except for I-group cod, there appeared to be a tendency for fish in low-density areas to be larger than fish in high-density areas; this might be due to feeding competition but other explanations are possible. The results urge caution in interpreting commercial catch data for evidence of density-dependent growth, since changes in fishing effort in particular areas could significantly bias the conclusions.
There was evidence of enhanced survival of small fish in good year-classes; this would depress the mean size at age, thereby mimicking the effects of density-dependent growth.     

Comparison of potential fecundity models for walleye pollock Gadus chalcogrammus in the Pacific waters off Hokkaido,Japan

Potential fecundity models of walleye or Alaska pollock Gadus chalcogrammus in the Pacific waters off Hokkaido, Japan, were developed. They were compared using a generalized linear model with using either standard body length (L_S) or total body mass (M_T) as a main covariate along with Fulton's condition factor (K) and mean diameter of oocytes (D_O) as additional potential covariates to account for maternal conditions and maturity stage. The results of model selection showed that M_T was a better single predictor of potential fecundity (F_P) than L_S. The biological importance of K on F_P was obscure, because it was statistically significant when used in the predictor with L_S (i.e. length‐based model), but not significant when used with M_T (i.e. mass‐based model). Meanwhile, D_O was statistically significant in both length and mass‐based models, suggesting the importance of downregulation on the number of oocytes with advancing maturation. Among all candidate models, the model with M_T and D_O in the predictor had the lowest Akaike's information criterion value, suggesting its better predictive power. These newly developed models will improve future comparisons of the potential fecundity within and among stocks by excluding potential biases other than body size.