Accurate modelling of unsteady flows in collapsible tubes

The context of this paper is the development of a general and efficient numerical haemodynamic tool to help clinicians and researchers in understanding of physiological flow phenomena. We propose an accurate one-dimensional Runge–Kutta discontinuous Galerkin (RK-DG) method coupled with lumped parameter models for the boundary conditions. The suggested model has already been successfully applied to haemodynamics in arteries and is now extended for the flow in collapsible tubes such as veins. The main difference with cardiovascular simulations is that the flow may become supercritical and elastic jumps may appear with the numerical consequence that scheme may not remain monotone if no limiting procedure is introduced. We show that our second-order RK-DG method equipped with an approximate Roe's Riemann solver and a slope-limiting procedure allows us to capture elastic jumps accurately. Moreover, this paper demonstrates that the complex physics associated with such flows is more accurately modelled than with traditional methods such as finite difference methods or finite volumes. We present various benchmark problems that show the flexibility and applicability of the numerical method. Our solutions are compared with analytical solutions when they are available and with solutions obtained using other numerical methods. Finally, to illustrate the clinical interest, we study the emptying process in a calf vein squeezed by contracting skeletal muscle in a normal and pathological subject. We compare our results with experimental simulations and discuss the sensitivity to parameters of our model.     

The contrasting effects of short‐ and long‐term habitat drainage on the population dynamics of freshwater turtles in a human‐dominated landscape

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Production of nitrous oxide in artificially flooded and drained soils

Production of nitrous oxide (N₂O) was studied in one peaty and one sandy soil undergoing wetting and drying cycles. The background concentration of N₂O in the soil was compared with the N₂O produced during 4 hours of incubation with and without addition of acetylene. The concentration of N₂O in the soil under flooded conditions was relatively stable, and net consumption of N₂O was observed as often as net production. The reference area and drained soils showed somewhat different patterns compared to the flooded soils, which was probably an effect of intermediate soil water conditions. During flooding, the nitrous oxide made up less than 1% of total denitrification on 50% and 54% of the sampling occasions for the peaty and the sandy soil, respectively, and N₂O/(N₂O+N₂)-ratios exceeded 0.2 on only 6% and 3% of the sampling occasions. Under drained conditions and in the reference areas, the ratios showed a more even frequency distribution. Grouping the nitrous oxide production data for different seasons and field conditions, we found few seasonal trends. At the sandy site, mean production of N₂O was larger during the winter months. There were weak correlations between N₂O production and floodwater nitrate concentration, and between N₂O production and soil temperature. N₂O production in the reference area varied between consumption and 4.6 kg N ha^–1 month^–1 and in flooded and drained soil between consumption and 2.6 kg N ha^–1 month^–1.     

Salt‐promoted protein folding,preferential binding,or electrostatic screening?

The extended coil/molten globule conformational equilibrium exhibited by ferricytochrome c in 10 to 20 mM HCl was examined using free boundary capillary electrophoresis. Addition of the osmolyte glucitol, also called sorbitol, to shift the conformational equilibrium toward the molten globule markedly diminished the mobility of the protein. This diminution can be entirely assigned to the relative viscosity of the added glucitol. The insensitivity of the viscosity corrected protein mobility to added glucitol suggests that both the extended coil and molten globule conformations of cytochrome c are free draining in an electrophoresis measurement. Addition of a neutral salt to shift the conformational equilibrium toward the molten globule conformation also markedly diminished the mobility of the protein. This diminution can be entirely assigned to the electrostatic screening afforded by the added salt. The onset of the conformational transition observed by optical measurements and the onset of electrostatic screening observed by mobility measurements appear to be in common for some but not all neutral salts. The exception suggests that preferential binding of the anion of a neutral salt to the molten globule conformation and not electrostatic screening is principally responsible for the shift in the conformational equilibrium of cytochrome c in acidic solutions.     

Monocyte-Derived CD11c+ Cells Acquire Plasmodium from Hepatocytes to Prime CD8 T Cell Immunity to Liver-Stage Malaria

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Exogenous dendritic cell homing to draining lymph nodes can be boosted by mast cell degranulation

Dendritic cells (DCs), as potent antigen presenting cells, are increasingly used for immunotherapeutic approaches, predominantly in oncology. Low efficiency of injected Ag-pulsed DC homing to draining lymph nodes (DLNs) is one of the factors that affect the efficacy of therapy. As Langerhans cell emigration was enhanced after skin mast cell degranulation, we investigated the effect of local mast cell activation on exogenous bone marrow-derived DCs (BM-DCs) homing to DLNs. Product of activated MC/9 mast cells enhanced chemotaxis of BM-DCs to CCL21 in vitro. Intradermal injection of compound 48/80 (c48/80) induced local skin mast cell obvious degranulation and boosted exogenous BM-DC homing to DLNs. Both Ag-specific lymphocyte proliferation and TH1/TH2 cytokine production increased after HBsAg-pulsed BM-DC was injected into c48/80 pretreated mice. These results suggest that transferred DC homing to DLNs promoted by local mast cell degranulation may have potential application to improve DC-based immunotherapy.     

Effects of habitat restoration on peatland bird communities

Restoration of damaged ecosystems has become an important tool to slow down biodiversity loss and to maintain ecosystem services. Peatland bird populations have shown a substantial decline during the recent decades in Northern Europe as a consequence of peatland drainage. We studied whether restoration of peatlands drained for forestry affects bird communities. We conducted bird surveys at 11 peatlands in Western Finland, where each of the restored and their pristine counterparts were surveyed before restoration and yearly after restoration during 2010–2018. We used linear mixed effect models to analyze whether restoration affected the number of species and territories of peatland specialist and non‐specialist species and permutational multivariate analysis of variance to analyze the change in community composition. Drained parts of the peatlands had higher number of territories of non‐specialist species before restoration, and restoration seemed to decrease these numbers towards the level of pristine parts. By contrast, restoration did not affect the number of peatland specialists and their territories, which was lower in drained than in pristine parts of the peatlands. Bird communities in restored parts remained different from pristine parts in terms of community composition after restoration. Thus, despite the effect of restoration on non‐specialists, a substantially long time may be required for a recovery of the peatland bird communities. Based on our results, it seems that long‐term monitoring of the restored and pristine peatlands is needed to determine whether restoration is effective in recovering the peatland specialist bird species and bird communities in general.     

Colorectal carcinoma rearranges cell surface protein topology and density in CD4+ T cells

Previously, we described conserved protein clusters including MHC I and II glycoproteins, ICAM-1 adhesion molecules, and interleukin-2 and -15 receptors in lipid rafts of several human cell types. Differential protein-protein interactions can modulate function, thus influence cell fate. Therefore, we analyzed supramolecular clusters of CD4(+) T cells from draining lymph nodes and peripheral blood of colorectal carcinoma patients, and compared these to healthy controls. Superclusters of MHC I and II with IL-2/15 receptors were identified by confocal microscopy on all cell types. Flow-cytometric FRET revealed molecular associations of these proteins with each other and with ICAM-1 as well. In draining lymph nodes expression levels of all these proteins were lower, and interactions, particularly between IL-2/15 receptors and MHC molecules weakened or disappeared as compared to the control. Stimuli/local conditions can rearrange cell surface protein patterns on the same cell type in the same patient, having important implications on further function and cell fate.     

辽河三角洲盘锦湿地防洪功能研究

对辽河三角洲盘锦湿地洪水特征、洪灾的演变,湿地的防洪功能进行分析研究,揭示了洪水对湿地形成的生态意义以及湿地在抗洪减灾中的作用。为减少洪灾造成的经济损失,应用加大对天然湿地的保护力度,充分发挥湿地在减灾中的功能,并根据盘锦湿地的水文地质特征和防洪减灾中的景观功能将湿规划分为重点防护区,洪水地下存储区,泄洪区,紧急分洪区和防洪排涝区,可作为当地区域发展规划时参考。