Effect of continuous application of manures and fertilizers on rhizosphere microflora in arecanut palm

Summary The rhizosphere microflora of arecanut palm under continuous application of organic manures and inorganic fertilizers was studied. The nutrients applied are 100 g N, 40 g P₂O₅ and 140 g K₂O/palm/year in the form of organics and inorganics. The application of organic manure increased the microbial population. The increase in microbial population was observed between the rhizosphere samples collected at 0–30cm and 30–60 cm depths. The surface cultivation of soil increased the microbial population.Trichoderma sp. andAspergillus sp. dominated in therhizosphere of arecanut palm. Contribution No. 208. Central Plantation Crops Research Institute, Vittal-574243, Karnataka, India.     

Enumeration and presumptive identification of some functional groups of bacteria in the rumen of dairy cows fed grass silage-based diets

Abstract Samples of rumen ingesta from two rumen-fistulated dairy cows fed grass silage-based diets were examined for numbers and types of bacteria that developed colonies on rumen fluid-agar media designated to support the growth of (a) a wide range of species, (b) cellulolytic bacteria, (c) lactate-fermenting bacteria, (d) non-fermentative bacteria. The most numerous species was Bacteroides ruminicola followed by Butyrivibrio fibrisolvens . The most abundant cellulolytic species were Eubacterium cellulosolvens and Ruminococcus flavefaciens. Megasphaera elsdenii and Selenomonas ruminantium were important lactate fermenters but an unidentified bacterium that grew poorly on maintenance medium was by far the most numerous among bacteria isolated from lactate-containing medium. One strain remained sufficiently viable to show that it fermented lactate to propionate and acetate.     

几种常用中药对地鼠肠道正常菌群的影响

我们选择了几种药性不同的中药,使用各种选择性培养基,对给药组和正常动物组的地鼠肠菌群进行了研究,结果表明,黄芪组与正常动物组比较需氧菌的量有所增加,统计学差异显著(P<0.001)。而其他几味苦寒药(大黄、黄芩、白芍等)对需氧菌的作用不明显。在各类厌氧菌的分离结果中,各给中药组与正常组比较均有明显差异。给药组之间比较,药性相同的组之间没有显著变化,药性不同的组之间变化显著。通过实验我们发现中药对正常地鼠的肠道菌群是有明显影响的,与正常动物组相比及不同药性组间相比各类菌的增长或减少都具有统计学意义。     

青藏高原垫状点地梅叶际及内生可培养微生物多样性

【背景】垫状点地梅作为青藏高原最具代表性的垫状植物,其叶际和内生微生物对适应极端环境有重要意义,同时也是一种独特的资源。【目的】探究垫状点地梅叶际和叶内可培养微生物多样性,以及不同生存状态个体之间的微生物差异。【方法】采用纯培养方法分离和纯化3个不同地区垫状点地梅叶际和叶内的细菌、酵母菌和丝状真菌,并用16S rRNA基因和ITS区域序列进行分析鉴定。【结果】最终得到叶际微生物350株,鉴定为22属49种,优势种为Penicillium sajarovii;内生微生物274株,鉴定为19属45种,优势种为Bacillusmycoides;两者的优势属均为Penicillium。垫状点地梅叶际和叶内之间及不同生存状态个体之间微生物的α多样性大多无显著差异,各群落间的成员也有重叠,但物种组成存在显著的空间异质性。【结论】垫状点地梅叶际和叶内有着丰富的可培养微生物资源,来源于不同生存状态的个体或不同部位的微生物物种组成差别较大,微生物对不同环境的选择偏好形成了不同的群落模式。但这些不同来源的微生物群落之间同样存在高比例的共有菌株,这些共有菌株的异养方式和生态位并不固定,可兼共生和腐生生存,生...     

Effect of the chemical and physical condition of the soil on Verticillium wilt of antirrhinum

Summary In vitro study showed thatVerticillium dahliae Kleb. grew well in a wide range of acid and alkaline media (viz. pH 3.5 to 10.5). The best growth of the fungus was observed in pH 5.5. Soil pH 3.5 was toxic for growing antirrhinum seedlings. Development of Verticillium wilt of antirrhinum was affected by soil pH. The severity of the disease was greater in alkaline soil conditions compared with acid conditions. Soil of pH 3.5 gave very good control of the symptom expression by the infected plants. Rhizosphere analysis results showed that fungal population with the exception ofPenicillium spp., was drastically reduced in the rhizosphere of the plants grown in acid soil. Although the overall population of fungi was reduced in theV. dahliae infected antirrhinum rhizosphere in acid soil, the population ofPenicillium spp. markedly increased. The antagonistic activity of thePenicillium spp. in the rhizosphere might also have reduced the disease severity. Since the seedlings did not grow properly in very dry and very wet soil, rhizosphere analysis of these soils was not possible. Disease severity was much less in wet soil compared with plants grown in medium moisture level and dry soil, but the plant growth was very poor. Dedicated to the memory of the late Prof. H. K. Baruah from whom I had the inspiration for research     

织金洞钟乳石沉积物表面可培养细菌多样性和网络分析

【背景】洞穴环境中蕴含丰富而独特的细菌资源,对洞穴环境中细菌的分离培养有助于了解洞穴细菌多样性及细菌资源的挖掘和利用。【目的】利用不同培养基分离细菌,探究钟乳石表面可培养细菌的多样性及其种间互作关系。【方法】通过11种培养基对织金洞内钟乳石沉积物表面的细菌进行分离纯化,并利用16S rRNA基因序列分析初步确定分离菌株的分类地位。在R软件下,通过Bipartite包分析可培养细菌属间的相互作用。【结果】从钟乳石沉积物表面共分离出206株细菌,它们隶属于4门25属45种,香农(Shannon)指数为4.78,辛普森(Simpson)指数为0.95。变形菌门(Proteobacteria)和芽孢杆菌属(Bacillus)分别为样品中可培养细菌的优势门(47.09%)和优势属(29.61%)。无机寡营养培养基有助于洞穴钟乳石沉积物细菌的分离。属水平-采样点网络分析表明,可培养细菌分布具有非随机、显著的嵌套性。芽孢杆菌属(Bacillus)、德沃斯氏菌属(Devosia)、产碱杆菌属(Alcaligenes)、节杆菌属(Arthrobacter)和短杆菌属(Brevibacterium)在细菌群落中存在较多的有效合作值(Effective Partners)和亲密度(Closeness),被其他细菌所依赖程度(Species Strength)较高,是该群落中的重要组成类群。【结论】织金洞内钟乳石沉积物表面存在丰富的细菌资源,分析细菌类群在群落中的作用应结合细菌相对丰度和网络分析。     

Polysaccharide breakdown by mixed populations of human faecal bacteria

Measurements of polysaccharide-degrading activity in different fractions of human faeces showed that bacterial polysaccharidases and glycosidases were primarily associated with the washed bacterial fractions. Amylase, pectinase and xylanase were the major polysaccharide-hydrolysing enzymes detected, whilst α-L-arabinofuranosidase, β-D-xylosidase, β-D-galactosidase and β-D-glucosidase were the most active glycosidases. Starch and 3 non-starch polysaccharides (NSP; pectin, xylan and arabinogalactan) were fermented by mixed populations of human faecal bacteria in batch culture. Detailed carbohydrate analysis demonstrated that starch and pectin were the most rapidly degraded substrates and that arabinogalactan and the relatively insoluble polysaccharide xylan were broken down more slowly. Free sugars and oligosaccharides did not accumulate in culture media with any polysaccharide tested. Time-course measurements of polysaccharide remaining in the batch culture fermentations showed that the arabinose side chains of pectin, xylan and arabinogalactan were co-utilised with the backbone sugars. In these cultures, polysaccharide-degrading activity was mainly cell-associated, but extracellular polysaccharidase activity increased as the fermentations progressed. Molar ratios of acetate, propionate and butyrate produced in these experiments were dependent upon the polysaccharide substrate tested. Molar ratios of acetate, propionate and butyrate in the starch, arabinogalactan, xylan and pectin fermentations were 50:22:29, 50:42:8, 82:15:3, and 84:14:2, respectively. The presence of starch did not inhibit the breakdown of arabinogalactan, xylan or pectin by faecal bacterial, providing evidence that multicomponent substrate utilisation occurs when complex populations of faecal bacteria are provided with mixed polysaccharide substrates.     

Microbial diversity of intestinal contents and mucus in rainbow trout (Oncorhynchus mykiss)

AIMS: The aim of this study was to understand the microbial community of intestinal contents and mucosal layer in the intestine of rainbow trout by means of culture-dependent conventional and independent molecular techniques. METHODS AND RESULTS: Forty-one culturable microbial phylotypes, and 39 sequences from 16S rRNA and two from 18S rRNA genes, were retrieved. Aeromonadaceae, Enterobacteriaceae and Pseudomonadaceae representatives were the dominant cultured bacteria. Genomic DNA isolated from intestinal contents and mucus was used to generate 104 random clones, which were grouped into 32 phylotypes at 99% minimum similarity, most of which were affiliated with Proteobacteria (>70% of the total). However, unlike library C (intestinal contents), the phyla Bacteroidetes and Fusobacteria were not found in intestinal mucus (library M), indicating that the microbiota in the gut mucus was different from that of the intestinal contents. Twelve sequences were retrieved from denaturing gradient gel electrophoresis analysis, and dominant bands were mostly related to Clostridium. CONCLUSIONS: Many novel sequences that have not been previously recognized as part of the intestinal flora of rainbow trout were retrieved. SIGNIFICANCE AND IMPACT OF THE STUDY: The fish gut harbours a larger bacterial diversity than previously recognized, and the diversity of gut mucus is different from that of intestinal contents.     

二氢杨梅素对抗生素应激小鼠血清抗氧化性和肠道微生物多样性的影响

【背景】二氢杨梅素(dihydromyricetin, DMY)是一类存在于藤茶中的主要黄酮类化合物,具有抗氧化、抗炎等功能,其药用价值受到广泛关注,但其在生物体内的生物活性及肠道中的分解代谢机制尚不清楚。【目的】探究二氢杨梅素对抗生素应激下小鼠的血清抗氧化性和肠道微生物多样性的影响。【方法】将小鼠分为对照组、抗生素组、抗生素+二氢杨梅素组,检测各组小鼠血清中的抗氧化指标,利用高通量测序分析组间肠道微生物多样性的差异,通过实时荧光定量PCR(real-time fluorescence quantitative polymerase chain reaction, RT-qPCR)验证特定菌群组间的相对丰度差异。【结果】二氢杨梅素显著提高了抗生素应激小鼠血清中过氧化氢酶(catalase, CAT)、超氧化物歧化酶(superoxide dismutase, SOD)、谷胱甘肽过氧化物酶(glutataione peroxidase, GSH-PX)活性(P<0.05),显著降低丙二醛(malondialdehyde,MDA)含量(P<0.05),催化一氧化氮(nitric...