Identifying and Controlling for Variation in Canid Harvest Data

An accurate understanding of harvest trends is required for effective wildlife management. Trapper harvest data represent valuable long-term data for evaluating patterns and trends for wildlife species at broad spatiotemporal scales. Inferring accurate trends from harvest data, however, first requires identifying and controlling for confounding factors that vary independent of abundance. We investigated trends in 43 years of trapper harvest data (1976–2018) from Illinois, USA, for red fox (Vulpes vulpes), gray fox (Urocyon cinereoargenteus), and coyote (Canis latrans) while controlling for factors that may affect trapper effort, including number of effective (i.e., successful) trappers, pelt price, gasoline price, winter unemployment, and winter weather conditions. Annual trapper harvest for red and gray foxes declined and was affected by gasoline price and winter unemployment, whereas annual trapper harvest for coyotes increased and was not strongly affected by other covariates. After adjusting for pelt price, harvest of red foxes was relatively stable, but harvest of gray foxes declined and harvest of coyotes increased. Effects of covariates on harvest per successful trapper varied by species; nevertheless, we detected an increasing trend for coyotes and decreasing trends for gray foxes and red foxes. Concordance across indices for gray foxes and coyotes was consistent with hypothesized declines for gray foxes and increases for coyotes in the midwestern United States. Trends for red foxes varied depending on how we accounted for potential confounding factors and it is unclear if these trends suggest population declines or distribution shifts to urban areas with reduced trapping susceptibility. Our results highlight the importance of understanding sources of variation in harvest data and that their effects can vary across species. © 2020 The Wildlife Society.     

Predator densities and white-tailed deer fawn survival

Predation is the dominant source of mortality for white-tailed deer (Odocoileus virginianus) <6 months old throughout North America. Yet, few white-tailed deer fawn survival studies have occurred in areas with 4 predator species or have considered concurrent densities of deer and predator species. We monitored survival and cause-specific mortality from birth to 6 months for 100 neonatal fawns during 2013–2015 in the Upper Peninsula of Michigan, USA, while simultaneously estimating population densities of deer, American black bear (Ursus americanus), coyote (Canis latrans), bobcat (Lynx rufus), and gray wolf (Canis lupus). We estimated fawn predation risk in response to sex, birth mass, and date of birth. Six-month fawn survival pooled among years was 36%, and fawn mortality risk was not related to birth mass, date of birth, or sex. Estimated mean annual deer and predator densities were 334 fawns/100 km², 25.9 black bear/100 km², 23.8 coyotes/100 km², 3.8 bobcat/100 km², and 2.8 wolves/100 km². Despite lower estimated per-individual kill rates, coyotes and black bears were the leading sources of fawn mortality because they had greater densities relative to bobcats and wolves. Our results indicate that the presence of more predator species in a system is not entirely additive in its effect on fawn survival. © The Wildlife Society, 2019     

The Effect of Snowmobile Trails on Coyote Movements Within Lynx Home Ranges

Abstract: Coyotes (Canis latrans) and Canada lynx (Lynx canadensis) are sympatric throughout much of the lynx's southern range. Researchers and managers have suggested that the presence of compacted snowmobile trails may allow coyotes to access lynx habitat from which they were previously excluded by deep, unconsolidated snow. This could then allow coyotes to more effectively compete with lynx for snowshoe hares (Lepus americanus), the lynx's primary prey. We investigated how coyotes interacted with compacted snowmobile trails by conducting carnivore track surveys and by snow tracking adult coyotes (4 M, 8 F) in areas of western Montana, USA, with both documented lynx presence and recreational snowmobile use. Coyotes remained in lynx habitat having deep snow throughout the winter months. They used compacted snowmobile trails for 7.69% of their travel distance and traveled on them for a median distance of 124 m. Coyotes used compacted forest roads (5.66% of total travel) and uncompacted forest roads (4.62% of total travel) similarly. Coyotes did not travel closer to compacted snowmobile trails than random expectation (coyote x̄ distance from compacted trails = 368 m, random expectation = 339 m) and the distance they traveled from these trails did not vary with daily, monthly, or yearly changes in snow supportiveness or depth. However, they strongly selected for naturally shallower and more supportive snow surfaces when traveling off compacted snowmobile trails. Coyotes were primarily scavengers in winter (snowshoe hare kills composed 3% of coyote feed sites) and did not forage closer to compacted snowmobile trails than random expectation. The overall influence of snowmobile trails on coyote movements and foraging success during winter appeared to be minimal on our study area. The results of this study will allow land managers to better assess the effects of snow-compacting activities on coyotes and lynx.     

Coyotes as Sentinels for Monitoring Bovine Tuberculosis Prevalence in White-Tailed Deer

Abstract: Mycobacterium bovis, the causative agent of bovine tuberculosis (bTB), is endemic in free-ranging white-tailed deer (Odocoileus virginianus) in 5 counties (Alcona, Alpena, Montmorency, Oscoda, and Presque Isle) in the northeastern Lower Peninsula of Michigan, USA. The presence of a wildlife reservoir of tuberculosis in Michigan and the incidence of bTB in cattle (Bos taurus) resulted in Michigan losing its bTB accredited-free status. Subsequent wildlife surveillance programs identified relatively high disease prevalence in coyotes (Canis latrans), generating interest in their potential to serve as a sentinel species to detect bTB prevalence in white-tailed deer. Our goal was to develop an empirical basis for generating hypotheses about the spatial epidemiology of bTB infection in coyotes for future surveillance, management, and modeling efforts. Though variation in coyote home-range size may confound attempts to spatially correlate the incidence of disease in the sentinel and host species at a fine scale, overlap zones (OZs) between adjacent coyote home ranges may be the appropriate sample unit for spatially correlating disease prevalence in coyotes and white-tailed deer. Because overlapping home ranges are generally configured around resource rich (e.g., small mammals and white-tailed deer) timber management patches, the OZ concentrates spatial interaction between adjacent groups in a relatively small area. Furthermore, there is a direct relationship between interaction probabilities and the spatial dispersion of those patches. The latter finding provides a useful metric to incorporate into future efforts to develop spatially explicit models of bTB dynamics. Modeling efforts can then be used as a foundation to predict the epidemiological ramifications of alterations in intensively managed forested landscapes. (JOURNAL OF WILDLIFE MANAGEMENT 71(5):1545-1554; 2007)     

Coyote Abundance,Sheep Predation,and Wild Prey Correlates Illuminate Mediterranean Trophic Dynamics

ABSTRACT Sheep predation by coyotes (Canis latrans) is a major problem for sheep producers in North America. Solutions are facilitated by a basic understanding of the trophic dynamic context of this problem, one that likely varies geographically in important qualitative ways. Little is known about vertebrate trophic dynamics in Mediterranean ecosystems, where prey are diverse and their biomass is strongly influenced multi-annually by variable rainfall. We used long-term data sets from north-coastal California, USA, to investigate whether wild prey fluctuations caused immediate negative effects on sheep predation via a reduction in the coyote functional response or delayed positive effects on sheep predation via a numerical response by coyote predators. Because we could not measure prey biomass directly, we used variables associated with lower trophic levels (e.g., annual plant productivity, vole abundance, rainfall) as proxies for wild prey biomass. Coyote population growth rate was positively correlated with lower-trophic-level variables of the previous year, suggesting a numerical response, and sheep (ad F + lambs) predation was positively correlated with coyote abundance in the current year. Sheep predation also was negatively correlated with lower-trophic-level variables of the current year, suggesting an immediate buffering effect of wild prey on sheep predation. Together, coyote abundance and lower-trophic-level variables explained 47% of the multi-annual variation in sheep kills. The negative pathway between lower-trophic-level variables and sheep predation was stronger than the positive pathway, possibly due to the erratic nature of multi-annual fluctuations in lower-trophic-level variables, which could prevent the numerical response from reaching its full potential. Monthly analyses revealed a type III functional response of coyotes to lambs, which is expected to enhance buffering effects of wild prey on sheep predation. Our findings suggest the dominant effect of wild prey biomass on sheep predation by coyotes in this Mediterranean-type community is as a buffer.     

Interference competition between coyotes and raccoons: a test of the mesopredator release hypothesis

Some predator species appear to conform to the mesopredatorrelease hypothesis (MRH), in which larger predators help limitpopulations of smaller predators. This hypothesis has been usedto explain the possible relationship between coyotes, mesopredators,and resultant cascades involving nonpredators. However, relationshipsbetween coyotes and noncanid mesopredators are poorly understood,and predictions from the MRH have rarely been rigorously tested.We monitored sympatric raccoon and coyote populations to assess2 predictions derived from the MRH: coyote predation is an importantcause of mortality in raccoon populations or raccoons avoidareas used by coyotes. Between March 2000 and September 2001,we recorded 3553 locations for 27 radio-collared raccoons and1393 locations for 13 coyotes captured on the Max McGraw WildlifeFoundation in Illinois, USA. No raccoon mortality from coyotepredation was observed during the study, and raccoon survivalwas >0.7 each season. All raccoon 95% home ranges exhibitedoverlap with 95% coyote home ranges in each season. The meanproportion of raccoon locations within 95% coyote home rangesdid not vary by sex but did vary by season. Raccoon overlapof coyote core areas varied considerably among individuals withinseasons, ranging from 0% to 83%. However, 45% of raccoons had<10% overlap with coyote core areas, whereas only 14% ofraccoons exhibited >50% overlap. Mean overlap with core areasdid not vary by season or sex. For those raccoons with homeranges overlapping coyote core areas, mean proportion of observedraccoon locations within coyote core areas was generally greaterthan the mean proportion of random locations. Scent-stationexperiments failed to document raccoon avoidance of specificsites that had been marked with coyote urine. We did not findsupport for a mortality prediction or avoidance prediction tosupport MRH with regard to raccoons and coyotes. These resultssuggest that relationships among mammalian predators may notbe simply dictated by body size, particularly for species outsidethe Canidae.     

Fine‐scale movements and behaviors of coyotes (Canis latrans) during their reproductive period

In canids, resident breeders hold territories but require different resources than transient individuals (i.e., dispersers), which may result in differential use of space, land cover, and food by residents and transients. In the southeastern United States, coyote (Canis latrans) reproduction occurs during spring and is energetically demanding for residents, but transients do not reproduce and therefore can exhibit feeding behaviors with lower energetic rewards. Hence, how coyotes behave in their environment likely differs between resident and transient coyotes. We captured and monitored 36 coyotes in Georgia during 2018–2019 and used data from 11 resident breeders, 12 predispersing residents (i.e., offspring of resident breeders), and 11 transients to determine space use, movements, and relationships between these behaviors and landcover characteristics. Average home range size for resident breeders and predispersing offspring was 20.7 ± 2.5 km² and 50.7 ± 10.0 km², respectively. Average size of transient ranges was 241.4 ± 114.5 km². Daily distance moved was 6.3 ± 3.0 km for resident males, 5.5 ± 2.7 km for resident females, and 6.9 ± 4.2 km for transients. We estimated first‐passage time values to assess the scale at which coyotes respond to their environment, and used behavioral change‐point analysis to determine that coyotes exhibited three behavioral states. We found notable differences between resident and transient coyotes in regard to how landcover characteristics influenced their behavioral states. Resident coyotes tended to select for areas with denser vegetation while resting and foraging, but for areas with less dense vegetation and canopy cover when walking. Transient coyotes selected areas closer to roads and with lower canopy cover while resting, but for areas farther from roads when foraging and walking. Our findings suggest that behaviors of both resident and transient coyotes are influenced by varying landcover characteristics, which could have implications for prey.     

Field Sedation of Coyotes,Red Foxes,and Raccoons With Medetomidine and Atipamezole

Abstract: We chemically restrained free-ranging coyotes (Canis latrans), red foxes (Vulpes vulpes), and raccoons (Procyon lotor) using medetomidine antagonized by atipamezole. All coyotes and 80% of red foxes were sedated with mean ± standard deviation doses of 0.12 ± 0.02 mg/kg and 0.14 ± 0.02 mg/kg medetomidine, respectively. Seventy-seven percent of raccoons were sedated with 0.21 ± 0.05 mg/kg medetomidine. In all species we observed occasional movement, muscle rigidity, and partial-arousal during sedation. Animals were alert within 4.3–8.6 ± 3.5–8.4 min following atipamezole at 0.4 mg/kg. Medetomidine and atipamezole provided safe handling in most animals and rapid recovery without use of a controlled substance. At these doses, biologists in the field should be prepared to administer a supplementary dose of medetomidine to some animals depending on ambient conditions and the objectives of the restraint event.     

Using the dog genome to find single nucleotide polymorphisms in red foxes and other distantly related members of the Canidae

Single nucleotide polymorphisms (SNP) are the ideal marker for characterizing genomic variation but can be difficult to find in nonmodel species. We explored the usefulness of the dog genome for finding SNPs in distantly related nonmodel canids and evaluated so-ascertained SNPs. Using 40 primer pairs designed from randomly selected bacterial artificial chromosome clones from the dog genome, we successfully sequenced 80-88% of loci in a coyote (Canis latrans), grey fox (Urocyon cinereoargenteus), and red fox (Vulpes vulpes), which compared favourably to a 60% success rate for each species using 10 primer pairs conserved across mammals. Loci were minimally heterogeneous with respect to SNP density, which was similar, overall, in a discovery panel of nine red foxes to that previously reported for a panel of eight wolves (Canis lupus). Additionally, individual heterozygosity was similar across the three canids in this study. However, the proportion of SNP sites shared with the dog decreased with phylogenetic divergence, with no SNPs shared between red foxes and dogs. Density of interspecific SNPs increased approximately linearly with divergence time between species. Using red foxes from three populations, we estimated F(ST) based on each of 42 SNPs and 14 microsatellites and simulated null distributions conditioned on each marker type. Relative to SNPs, microsatellites systematically underestimated F(ST) and produced biased null distributions, indicating that SNPs are superior markers for these functions. By reconstituting the frequency spectrum of SNPs discovered in nine red foxes, we discovered an estimated 77-89% of all SNPs (within the region screened) present in North American red foxes. In sum, these findings indicate that information from the dog genome enables easy ascertainment of random and gene-linked SNPs throughout the Canidae and illustrate the value of SNPs in ecological and evolutionary genetics.