利用秆维管束进行中国散生竹类的聚类分析

本文是应用模糊聚类分析方法研究中国散生竹类分类的一次尝试。分类特征采用了竹秆上、中、下三段各类型维管束数,方法上使用了模糊(Fuzzy)直接聚类分析进行综合分析。经电子计算机运算后,不仅取得了与传统分类基本一致的分类结果,同时也表明这种方法较之其它一些植物数量分类方法简便易行,此外还讨论了一些中国散生竹类分类上的问题。     

Testing four candidate barcoding markers in temperate woody bamboos (Poaceae: Bambusoideae)

Abstract Bambusoideae is an important subfamily of the grass family Poaceae that has considerable economic, ecologic and cultural value. In addition, Bambusoideae species are important constituents of the forest vegetation in China. Because of the paucity of flower‐bearing specimens and homoplasies of morphological characters, it is difficult to identify species of Bambusoideae using morphology alone, especially in the case of temperate woody bamboos (i.e. Arundinarieae). To this end, DNA barcoding has shown great potential in identifying species. The present study is the first attempt to test the feasibility of four proposed DNA barcoding markers (matK, rbcL, trnH–psbA, and internal transcribed spacer [ITS]) in identifying 27 species of the temperate woody bamboos. Three plastid markers showed high levels of universality, whereas the universality of ITS was comparatively low. A single plastid marker provided low levels of discrimination success at both the genus and species levels (<12%). Among the combinations of plastid markers, the highest discriminatory power was obtained using the combination of rbcL+matK (14.8%). Using a combination of three markers did not increase species discrimination. The nuclear region ITS alone could identify 66.7% of species, although fewer taxa were included in the ITS analyses than in the plastid analyses. When ITS was integrated with a single or combination of plastid markers, the species discriminatory power was significantly improved. We suggest that a combination of rbcL+ ITS, which exhibited the highest species identification power of all combinations in the present study, could be used as a potential DNA barcode for temperate woody bamboos.     

武夷山五种竹子叶、枝、秆碳氮磷化学计量对生长阶段和海拔的响应

探究竹子化学计量特征对生长阶段和海拔的响应对于了解其生理生态特征及生长适应策略至关重要。对武夷山沿海拔分布的五种典型竹子叶、枝、秆的碳(C)、氮(N)、磷(P)含量及化学计量内稳态指数(H)进行两个生长阶段的测定。结果显示不论生长阶段的变化,各器官N、P含量的变异系数均显著大于C含量,且秆的N、P含量变异系数要显著大于叶片和竹枝,但不同生长阶段并未改变秆的N∶P (12∶1)。毛竹4月份枝和8月份叶的N、P含量均随海拔增加而降低,而箬竹叶的N、P含量均随海拔增加而增加。海拔和生长阶段的交互作用显著提高了竹秆N含量对生长阶段变化的响应。竹叶N和秆的N、P含量在不同生长阶段具有明显的内稳性调控机制,但竹枝N、P的内稳性特征表现不明显。总而言之,这些结果一方面反映了武夷山五种竹子偏向于选择维持叶N含量的内稳态机制,另一方面调节秆N、P含量的协变来应对海拔和生长阶段变化中养分的利用策略。     

Carbon dioxide emission from bamboo culms

Bamboos are one of the fastest growing plants on Earth, and are widely considered to have high ability to capture and sequester atmospheric carbon, and consequently to mitigate climate change. We tested this hypothesis by measuring carbon dioxide (CO₂) emissions from bamboo culms and comparing them with their biomass sequestration potential. We analysed diurnal effluxes from Bambusa vulgaris culm surface and gas mixtures inside hollow sections of various bamboos using gas chromatography. Corresponding variations in gas pressure inside the bamboo section and culm surface temperature were measured. SEM micrographs of rhizome and bud portions of bamboo culms were also recorded. We found very high CO₂ effluxes from culm surface, nodes and buds of bamboos. Positive gas pressure and very high concentrations of CO₂ were observed inside hollow sections of bamboos. The CO₂ effluxes observed from bamboos were very high compared to their carbon sequestration potential. Our measurements suggest that bamboos are net emitters of CO₂ during their lifespan.     

Non-monophyly of the woody bamboos (Bambuseae; Poaceae): a multi-gene region phylogenetic analysis of Bambusoideae s.s.

The taxonomy of Bambusoideae is in a state of flux and phylogenetic studies are required to help resolve systematic issues. Over 60 taxa, representing all subtribes of Bambuseae and related non-bambusoid grasses were sampled. A combined analysis of five plastid DNA regions, trnL intron, trnL-F intergenic spacer, atpB-rbcL intergenic spacer, rps16 intron, and matK, was used to study the phylogenetic relationships among the bamboos in general and the woody bamboos in particular. Within the BEP clade (Bambusoideae s.s., Ehrhartoideae, Pooideae), Pooideae were resolved as sister to Bambusoideae s.s. Tribe Bambuseae, the woody bamboos, as currently recognized were not monophyletic because Olyreae, the herbaceous bamboos, were sister to tropical Bambuseae. Temperate Bambuseae were sister to the group consisting of tropical Bambuseae and Olyreae. Thus, the temperate Bambuseae would be better treated as their own tribe Arundinarieae than as a subgroup of Bambuseae. Within the tropical Bambuseae, neotropical Bambuseae were sister to the palaeotropical and Austral Bambuseae. In addition, Melocanninae were found to be sister to the remaining palaeotropical and Austral Bambuseae. We discuss phylogenetic and morphological patterns of diversification and interpret them in a biogeographic context.     

竹类植物叶片上八种蚜虫的形态变异分析

选取寄生于竹类植物叶片上的3科6属共8种蚜虫,即居竹舞蚜Astegopteryx bambusifoliae Takahashi、小舞蚜Astegopteryx minuta (van der Goot)、居竹坚蚜Cerataphis bambusifoliae Takahashi、林栖粉角蚜Ceratovacuna silvestrii (Takahashi)、塔毛角蚜Chaitoregma tattakana (Takahashi)、竹色蚜Melanaphis bambusae (Fullaway)、竹纵斑蚜Takecallis arundinariae (Essig)和竹梢凸唇斑蚜 Takecallis taiwanus (Takahashi),在光学显微镜下观察并测量了34个形态特征;统计比较了28个形态特征在种内的变异。通过主成分分析筛选形态特征,每两两特征对应统计作图,标出每种蚜虫的95％椭圆置信区间进行分析。结果表明,体形、腹管和触角的形态在不同的科间有较大差别,喙末端、跗节Ⅰ、跗节Ⅱ及爪的形态在科间有较高的趋同性;在种内各形态特征存在一定变异,其中喙末端 （CV=3.73%～7.59%）、跗节Ⅰ （CV=4.16%～12.05%）、跗节Ⅱ （CV=3.10%～8.39%）和爪（CV=2.60%～11.68%）的变异都很小。主成分分析筛选的第一主成分为喙末端、跗节Ⅰ、跗节Ⅱ和爪,不同的椭圆区间范围提示这些特征组合基本处于稳定的范围内。与蚜虫的取食行为和附着于植物表面相关的形态特征,如喙末端、跗节Ⅰ、跗节Ⅱ和爪等在不同类群间存在显著的相似性,暗示了寄生于竹类植物叶片的蚜虫在这些形态特征上的趋同适应。最后结合蚜虫的生物学信息,初步探讨了形态适应的机制。     

Identification of SNP markers for inferring phylogeny in temperate bamboos (Poaceae: Bambusoideae) using RAD sequencing

Phylogenetic relationships among temperate species of bamboo are difficult to resolve, owing to both the challenge of detecting sufficiently variable markers and their polyploid history. Here, we use restriction site–associated DNA sequencing to identify candidate loci with fixed allelic differences segregating between and within two temperate species of bamboos: Arundinaria faberi and Yushania brevipaniculata. Approximately 27 million paired‐end sequencing reads were generated across four samples. From pooled data, we assembled 67 685 and 70 668 de novo contigs from partial overlap among paired‐end reads, with an average length of 240 and 241 bp for the two species, respectively, which were used to investigate functional classification of RAD tags in a blastx search. Analysed separately by population, we recovered 29 443 putatively orthologous RAD tags shared across the four sampled populations, containing 28 023 sequence variants, of which c. 13 000 are segregating between species, and c. 3000 segregating between populations within each species. Analyses based on these RAD tags yielded robust phylogenetic inferences, even with data set constructed from surprisingly few loci. This study illustrates the potential for reduced‐representation genome data to resolve difficult phylogenetic relationships in temperate bamboos.