Activity Budgets Derived From Time-Depth Recorders in a Diving Mammal

Abstract: We describe a method to convert continuously collected time-depth data from archival time-depth recorders (TDRs) into activity budgets for a benthic-foraging marine mammal. We used data from 14 TDRs to estimate activity-specific time budgets in sea otters (Enhydra lutris) residing near Cross Sound, southeast Alaska, USA. From the TDRs we constructed a continuous record of behavior for each individual over 39-46 days during summer of 1999. Behaviors were classified as foraging (diving to the bottom), other diving (traveling, grooming, interacting), and nondiving (assumed resting). The overall average activity budget (proportion of 24-hr/d) was 0.37 foraging (8.9 hr/d), 0.11 in other diving (2.6 hr/d), and 0.52 nondiving time (12.5 hr/d). We detected significant differences in activity budgets among individuals and between groups within our sample. Historically, the sea otter population in our study area had been expanding and sequentially reoccupying vacant habitat since their reintroduction to the area in the 1960s, and our study animals resided in 2 adjacent yet distinct locations. Males (n = 5) and individuals residing in recently occupied habitat (n = 4) spent 0.28-0.30 of their time foraging (6.7-7.2 hr/d), 0.17-0.18 of their time in other diving behaviors (4.1-4.3 hr/d), and 0.53-0.54 of their time resting (12.7-13.0 hr/d). In contrast, females (n = 9) and individuals residing in longer occupied habitat (n = 10) spent 0.40 of their time foraging (9.6 hr/d), 0.08-0.09 of their time in other diving behaviors (1.9-2.2 hr/d), and 0.51-0.52 of their time resting (12.2-12.5 hr/d). Consistent with these differences, sea otters residing in more recently occupied habitat captured more and larger clams (Saxidomus spp., Protothaca spp., Macoma spp., Mya spp., Clinocardium spp.) and other prey, and intertidal clams were more abundant and larger in this area. We found that TDRs provided data useful for measuring activity time budgets and behavior patterns in a diving mammal over long and continuous time periods. Fortuitous contrasts in time budgets between areas where our study animals resided suggest that activity time budgets estimated from TDRs may be a sensitive indicator of population status, particularly in relation to prey availability.     

SUMMER DIVING BEHAVIOR OF MALE WALRUSES IN BRISTOL BAY, ALASKA

Pacific walruses ( Odobenus rosmarus divergens ) make trips from ice or land haul-out sites to forage for benthic prey. We describe dive and trip characteristics from time-depth-recorder data collected over a one-month period during summer from four male Pacific walruses in Bristol Bay, Alaska. Dives were classified into four types. Shallow (4 m), short (2.7 min), square-shaped dives accounted for 11% of trip time, and many were probably associated with traveling. Shallow (2 m) and very short (0.5 min) dives composed only 1% of trip time. Deep (41 m), long (7.2 min), square-shaped dives accounted for 46% of trip time and were undoubtedly associated with benthic foraging. V-shaped dives ranged widely in depth, were of moderate duration (4.7 min), and composed 3% of trip time. These dives may have been associated with navigation or exploration of the seafloor for potential prey habitat. Surface intervals between dives were similar among dive types, and generally lasted 1–2 min. Total foraging time was strongly correlated with trip duration and there was no apparent diel pattern of diving in any dive type among animals. We found no correlation between dive duration and postdive surface interval within dive types, suggesting that diving occurred within aerobic dive limits. Trip duration varied considerably within and among walruses (0.3–9.4 d), and there was evidence that some of the very short trips were unrelated to foraging. Overall, walruses were in the water for 76.6% of the time, of which 60.3% was spent diving.     

Soil moisture dynamics of calcareous grassland under elevated CO2

Water relations of nutrient-poor calcareous grassland under long-term CO₂ enrichment were investigated. Understanding CO₂ effects on soil moisture is critical because productivity in these grasslands is water limited. In general, leaf conductance was reduced at elevated CO₂, but responses strongly depended on date and species. Evapotranspiration (measured as H₂O gas exchange) revealed only small, non-significant reductions at elevated CO₂, indicating that leaf conductance effects were strongly buffered by leaf boundary layer and canopy conductance (leaf area index was not or only marginally increased under elevated CO₂). However, these minute and non-significant responses of water vapour loss accumulated over time and resulted in significantly higher soil moisture in CO₂-enriched plots (gravimetric spot measurements and continuous readings using a network of time-domain reflectometry probes). Differences strongly depended on date, with the smallest effects when soil moisture was very high (after heavy precipitation) and effects were largest at intermediate soil moisture. Elevated CO₂ also affected diurnal soil moisture courses and rewetting of soils after precipitation. We conclude that ecosystem-level controls of the water balance (including soil feedbacks) overshadow by far the physiological effects observed at the leaf level. Indirect effects of CO₂ enrichment mediated by trends in soil moisture will have far-ranging consequences on plant species composition, soil bacterial and faunal activity as well as on soil physical structure and may indirectly also affect hydrology and trace gas emissions and atmospheric chemistry. Received: 21 December 1997 / Accepted: 3 August 1998     

The root zone dynamics of water uptake by a mature apple tree

We report the results from a field experiment in which we examined the spatial and temporal patterns of water uptake by a mature apple tree (Malus domestica Borkh., ‘Splendour’) in an orchard. Time Domain Reflectometry (TDR) was used to measure changes in the soil's volumetric water content, and heat-pulse was used to monitor locally the rates of sap flow in the trunk and roots of the tree. We also measured the tree's distribution of root-length density and obtained supporting data to characterize the soil's hydraulic properties. The experimental data were used to examine the output of the WAVE-model (Vanclooster et al, 1995; Ecol. Model. 81, 183–185) in which soil water transport is predicted using Richards' equation, and where root uptake is represented by a distributed macroscopic sink term. When the surface soil layers were uniformly wet, 70% of the trees water uptake occurred in the top 0.4 m of the root zone, in which approximately 70% of the tree's fine roots were located. When a partial irrigation was applied to just one side of the root zone, the apple tree quickly shifted its pattern of water uptake with an almost two-fold increase in uptake from the wetter soil parts and a corresponding reduction in uptake from the drier parts. The response of root-sap flow to irrigation was almost immediate (i.e. root flow increased within hours of the irrigation). Following subsequent irrigations over the whole soil surface, TDR measurements revealed a surface-ward shift in the pattern of water extraction, and root flow measurements revealed a recovery in the uptake function of seemingly inactive roots located in the previously-dry soil. Via our root sap flow measurements, we observed two roots on the same tree locally responding quite differently to similar events of soil wetting. This observation suggests that there may be considerable functional variability across the apple root system. Our measurement-model calculations yielded similar results and stress the prime role played by the plant in modifying the root zone balance of water. Following an irrigation or rainfall event, root uptake by apple appears to be more dependent upon the near-surface availability of water than it is related to the distribution of fine roots.     

Sequence and structural analysis of 4SNc-Tudor domain protein from Takifugu Rubripes

The fugu SN4TDR protein belongs to an evolutionarily conserved family, consisting of four repeat staphylococcal nuclease-like domains (SN1-SN4) at the N-terminus followed by Tudor and SN-like domains (TSN). Sequence analysis showed that the C-terminal TSN domain is composed of a complete SN-like domain interdigitated with a Tudor domain. In despite of low level of sequence identities, five SN-like domains have a few conserved amino acids that may play essential roles in the function of the protein. Computer modeling and secondary structural prediction of the SN-like domains revealed the presence of similar structural features of β1-β2-β3-α1-β4-β5-α2-α3, which provides a structural basis for oligonucleotides binding. The loop region L_3α for binding sites between β3 and α1 of SN-like domains are different from human p100, implying the divergence in the structures of binding sites. These results indicate that fugu SN4TDR may bind methylated ligands and/or oligonucleotides through its distant domains.     

Phosphonodiamidate prodrugs of N-alkoxy analogs of a fosmidomycin surrogate as antimalarial and antitubercular agents

A series of N-alkoxy analogs of a l-leucine ethyl ester phosphonodiamidate prodrug of a fosmidomycin surrogate were synthesized and investigated for their ability to inhibit in vitro growth of P. falciparum and M. tuberculosis. These compounds originate by merging a previously reported successful phosphonate derivatisation with favorable modifications of the hydroxamate moiety. None of the synthesized compounds showed enhanced activity against either P. falciparum or M. tuberculosis in comparison with the parent free hydroxamate analog.     

Hydraulic lift in drought-tolerant and -susceptible maize hybrids

Hydraulic lift was investigated in a greenhouse study involving two drought-tolerant maize (Zea mays L.) hybrids (TAES176 and P3223) and a drought-susceptible hybrid (P3225) during the flowering stage. Root systems were grown in two soil compartments – a drier upper soil and a wetter deep soil. The plants were shaded for 3 h during the daytime. Soil volumetric water content (Ø_v) in the upper pots was measured with time domain reflectometry (TDR) before and after shading. An increase in Ø_v in the upper pot was detected with TDR in the drought-tolerant hybrids following 3 h of shading, but not in the drought-susceptible hybrid. Furthermore, water exuded from roots in the top soil layers was greater in the more drought-tolerant TAES176 than in P3223 (489 vs. 288 g per pot in 3 h, P<0.005). The sizable amount of water from hydraulic lift allowed TAES176 to reach a peak transpiration rate 27–42% higher than the drought-susceptible hybrid P3225 on the days when the evaporative demand was high. To our knowledge, this is the first experiment that reveals a significant surge of transpiration due to hydraulic lift following midday shading. Hydraulic lift also prevented soil moisture depletion in the upper pots with TAES176, but not with P3223 or P3225. Root characteristics may be responsible for differences in hydraulic lift of the three maize hybrids. There were 2.3–3.3-fold more primary roots in the deep moist soil in P3223 and TAES176 than in P3225 that may enable these hybrids to absorb and transport water at faster rates. Therefore, more water can be exuded into the upper drier soil when transpiration is suppressed by shading. Larger primary roots (20–28% larger diameter) and a higher root volume in the upper soil in TAES176 and P3223 than in P3225 may contribute to higher root hydraulic conductance and greater water efflux from the roots. The negligible hydraulic lift in P3225 may also relate to higher night-time transpiration of the hybrid. This report has documented, for the first time, the existence of genetic variations in hydraulic lift among maize hybrids and links between hydraulic lift and drought tolerance within maize plants. It appears that one of drought tolerance mechanisms in maize may lie in the extent of hydraulic lift.     

A novel technique for measuring heart rate in a free swimming marine vertebrate

A mouth opening sensor incorporating a magnet and Hall sensor attached to a data logging unit was used to monitor the breathing and foraging behavior of a free-swimming leatherback sea turtle (Dermochelys coriacea). Analysis of these data revealed a rhythmic low amplitude oscillation. Further investigation of the frequency of this signal lead us to believe that the movements (< 0.1 mm) are caused by the movement of blood through the nearby blood vessels. Putative heart rate decreased during dive descent and increased considerably during dive ascent reflecting the bradycardia and anticipatory tachycardia recorded by other means in other air-breathing divers. Oscillation frequencies were also comparable to the heart rate recorded in leatherbacks by means of implanted electrodes. We therefore propose that this device which was already known to reliably record behaviour such as breathing, feeding and buccal oscillations in sea turtles also has potential for recording other signals which cause movement on the external surface of an animal.     

Recent advancements in the development of anti-tuberculosis drugs

Modern chemotherapy has significantly improved patient outcomes against drug-sensitive tuberculosis. However, the rapid emergence of drug-resistant tuberculosis, together with the bacterium’s ability to persist and remain latent present a major public health challenge. To overcome this problem, research into novel anti-tuberculosis targets and drug candidates is thus of paramount importance. This review article provides an overview of tuberculosis highlighting the recent advances and tools that are employed in the field of anti-tuberculosis drug discovery. The predominant focus is on anti-tuberculosis agents that are currently in the pipeline, i.e. clinical trials.