From interstellar amino acids to prebiotic catalytic peptides: a review

Amino acids were most likely available on the primitive Earth, produced in the primitive atmosphere or in hydrothermal vents. Import of extraterrestrial amino acids may have represented the major supply, as suggested by micrometeorite collections and simulation experiments in space and in the laboratory. Selective condensation of amino acids in water has been achieved via N-carboxy anydrides. Homochiral peptides with an alternating sequence of hydrophobic and hydrophilic amino acids adopt stereoselective and thermostable beta-pleated sheet structures. Some of the homochiral beta-sheets strongly accelerate the hydrolysis of oligoribonucleotides. The beta-sheet-forming peptides have also been shown to protect their amino acids from racemization. Even if peptides are not able to self-replicate, i.e., to replicate a complete sequence from the mixture of amino acids, the accumulation of chemically active peptides on the primitive Earth appears plausible via thermostable and stereoselective beta-sheets made of alternating sequences.     

Regional-specific alterations in cell–cell junctions,cytoskeletal networks and myosin-mediated mechanical cues coordinate collectivity of movement of epithelial cells in response to injury

This study investigates how epithelial cells moving together function to coordinate their collective movement to repair a wound. Using a lens ex vivo mock cataract surgery model we show that region-specific reorganization of cell–cell junctions, cytoskeletal networks and myosin function along apical and basal domains of an epithelium mediates the process of collective migration. An apical junctional complex composed of N-cadherin/ZO-1/myosin II linked to a cortical actin cytoskeleton network maintains integrity of the tissue during the healing process. These cells’ basal domains often preceded their apical domains in the direction of movement, where an atypical N-cadherin/ZO-1 junction, linked to an actin stress fiber network rich in phosphomyosin, was prominent in cryptic lamellipodia. These junctions joined the protruding forward-moving lamellipodia to the back end of the cell moving directly in front of it. These were the only junctions detected in cryptic lamellipodia of lens epithelia migrating in response to wounding that could transmit the protrusive forces that drive collective movement. Both integrity of the epithelium and ability to effectively heal the wound was found to depend on myosin mechanical cues.     

铀的生物成矿作用及成矿过程中矿质元素循环

概述了微生物成矿作用,并介绍了硫杆菌、硫酸盐还原菌、铁细菌、硝化细菌、反硝化细菌等各种细菌在与铀的生物成矿过程相关的地质元素循环中所起到的作用。并展望了今后矿床中微生物种群的研究方向。     

Protein β-Sheet Nucleation Is Driven by Local Modular Formation

Despite its central role in the protein folding process, the specific mechanism(s) behind β-sheet formation has yet to be determined. For example, whether the nucleation of β-sheets, often containing strands separated in sequence by many residues, is local or not remains hotly debated. Here, we investigate the initial nucleation step of β-sheet formation by performing an analysis of the smallest β-sheets in a non-redundant dataset on the grounds that the smallest sheets, having undergone little growth after nucleation, will be enriched for nucleating characteristics. We find that the residue propensities are similar for small and large β-sheets as are their interstrand pairing preferences, suggesting that nucleation is not primarily driven by specific residues or interacting pairs. Instead, an examination of the structural environments of the two-stranded sheets shows that virtually all of them are contained in single, compact structural modules, or when multiple modules are present, one or both of the chain termini are involved. We, therefore, find that β-nucleation is a local phenomenon resulting either from sequential or topological proximity. We propose that β-nucleation is a result of two opposite factors; that is, the relative rigidity of an associated folding module that holds two stretches of coil close together in topology coupled with sufficient chain flexibility that enables the stretches of coil to bring their backbones in close proximity. Our findings lend support to the hydrophobic zipper model of protein folding (Dill, K. A., Fiebig, K. M., and Chan, H. S. (1993) Proc. Natl. Acad. Sci. U.S.A. 90, 1942–1946). Implications for protein folding are discussed.     

Prokaryotes in the WAIS Divide ice core reflect source and transport changes between Last Glacial Maximum and the early Holocene

We present the first long‐term, highly resolved prokaryotic cell concentration record obtained from a polar ice core. This record, obtained from the West Antarctic Ice Sheet (WAIS) Divide (WD) ice core, spanned from the Last Glacial Maximum (LGM) to the early Holocene (EH) and showed distinct fluctuations in prokaryotic cell concentration coincident with major climatic states. The time series also revealed a ~1,500‐year periodicity with greater amplitude during the Last Deglaciation (LDG). Higher prokaryotic cell concentration and lower variability occurred during the LGM and EH than during the LDG. A sevenfold decrease in prokaryotic cell concentration coincided with the LGM/LDG transition and the global 19 ka meltwater pulse. Statistical models revealed significant relationships between the prokaryotic cell record and tracers of both marine (sea‐salt sodium [ssNa]) and burning emissions (black carbon [BC]). Collectively, these models, together with visual observations and methanosulfidic acid (MSA) measurements, indicated that the temporal variability in concentration of airborne prokaryotic cells reflected changes in marine/sea‐ice regional environments of the WAIS. Our data revealed that variations in source and transport were the most likely processes producing the significant temporal variations in WD prokaryotic cell concentrations. This record provided strong evidence that airborne prokaryotic cell deposition differed during the LGM, LDG, and EH, and that these changes in cell densities could be explained by different environmental conditions during each of these climatic periods. Our observations provide the first ice‐core time series evidence for a prokaryotic response to long‐term climatic and environmental processes.     

Floristic distinctiveness and endemic richness of woody plants highlight the biodiversity value of the herriza among all Mediterranean heathlands

Background: Heathlands are relatively abundant in the landscape of the western Mediterranean region, especially in the Strait of Gibraltar region, where it is locally known as herriza. They are associated with a mild Mediterranean climate regime and with acid, nutrient-poor soils. They harbour a high plant diversity, often viewed as a consequence of the transition between European Atlantic heathland and Mediterranean sclerophyllous shrubland floras.

Aims: To determine whether species-rich Mediterranean heathlands, including the herriza, constitute distinct heathland formations rather than transitional vegetation units between Atlantic heathlands and Mediterranean garrigue shrublands.

Methods: We quantified species richness, endemism and analysed the β-diversity of the woody component of Mediterranean heathland communities throughout its geographic range, with special emphasis on the Strait of Gibraltar region.

Results: Mediterranean heathlands, including the herriza, are not transitional communities between Atlantic heathlands and Mediterranean shrublands. Woody species richness and, particularly, endemic richness was the highest in the herriza.

Conclusions: The high biodiversity values of the herriza are a likely consequence of the ecological singularity of the Strait of Gibraltar region and its known role as a glacial refugium. Despite its treeless feature, the herriza deserves special recognition and protection from both in its European and North African extension.     

Detection of single quantum dots in model organisms with sheet illumination microscopy

Single-molecule detection and tracking is important for observing biomolecule interactions in the microenvironment. Here we report selective plane illumination microscopy (SPIM) with single-molecule detection in living organisms, which enables fast imaging and single-molecule tracking and optical penetration beyond 300 μm. We detected single nanocrystals in Drosophila larvae and zebrafish embryo. We also report our first tracking of single quantum dots during zebrafish development, which displays a transition from flow to confined motion prior to the blastula stage. The new SPIM setup represents a new technique, which enables fast single-molecule imaging and tracking in living systems.     

植被格局对砒砂岩坡地降雨侵蚀的影响

为进一步研究砒砂岩区不同雨型下植被格局对坡面土壤侵蚀特征的影响,基于野外径流小区原位观测试验与景观生态学相结合的方法,通过对比分析不同坡面的植被斑块格局指数与产流产沙之间的相关关系,阐明植被格局对砒砂岩坡地降雨侵蚀的影响。结果表明:(1)该地区降雨可划分为3类,根据各植被坡面产流产沙能力,得出降雨侵蚀力表现为:雨型II(长历时、大雨量、大雨强) ＞ 雨型III(短历时、小雨量、中雨强) ＞ 雨型I(中历时、中雨量、小雨强)。降雨量和最大30min雨强与产流产沙量呈显著或极显著关系,相关系数0.695以上,是预测该区域水土流失的主要降雨因子。(2)各坡面水土保持能力与降雨类型有关,不同雨型下3种植被坡面减流减沙率分别达0.42%、20.8%以上,不同植被格局坡面减沙效益优于减流效益,3种植被坡面的减流能力为:雨型I ＞ 雨型III ＞ 雨型II。(3)3种植被坡面的径流泥沙模数由小到大依次为:均匀分布 ＜ 聚集分布 ＜ 随机分布,对比区域多年平均径流泥沙模数,3种植被坡面能够减少侵蚀达21.33%以上。(4)景观形状指数和分离度指数是影响坡面产流产沙的主要格局因子,相关系数分别达0.884和0.825以上。产流、产沙量与坡面植被斑块分离度呈显著正相关,与景观形状指数呈显著负相关。坡面产流量(Y₁)与斑块分离度(SPLIT)和景观形状指数(LSI)的关系式为Y₁=8.247SPLIT-6.605LSI+38.928,R²=0.905。以上结果表明植被斑块间的分离度越小,形状越复杂,坡面阻力增大,抗侵蚀能力越强。研究成果可为生态恢复过程中植被斑块格局的优化提供理论依据和数据支撑。     

A PRIMARY STUDY OF FOSSIL HILL FLORA FROM FILDES PENINSULA OF KING GEORGE ISLAND, ANTARCTICA

The fossil plants studied in this paper were collected by the Chinese Antarctic Expeditions (1986—1987 and 1987—1988) from the locality Fossil Hill on the Fildes Peninsula southwest of the King George Island of the South Shetland Islands.     

Probable insect cocoon or pupation chamber in a channel‐fill sandstone bed of the Lower Cretaceous Jinju Formation,South Korea

An ellipsoidal chamber which is composed of a very thin organic layer and emplaced in an enlargement continuing upwards into a vertical burrow is found in thin sections of a fluvial channel‐fill sandstone bed of the Lower Cretaceous Jinju Formation in South Korea. Micromorphological analysis demonstrates that the ellipsoidal chamber is attributable to Fictovichnus. It can be interpreted as a free‐standing wall of a wasp cocoon attributable to Fictovichnus sciuttoi or Fictovichnus aragon, or an organic lining of chafer beetle or weevil pupation chamber attributable to Fictovichnus gobiensis. The analysis further shows that the vertical burrow and enlargement appear to reflect chafer and weevil larval behaviour, but the arrangement of the chamber within the enlargement appears to be the same as a wasp cocoon inside a cell. Such uncertainties of ichnotaxonomic assignment and putative producer suggest that the Jinju specimen may reflect an aberrant pupation behaviour of coleopterans or hymenopterans. This Early Cretaceous specimen may be the earliest record of an insect pupation structure probably associated with a burrow. Its atypical morphologies and very rare occurrence in a channel sandstone bed without other evidence of pedogenesis suggest that the Jinju specimen was constructed in incipiently and briefly exposed sediment, unlike typical insect nesting structures constructed in soil.