土壤中群体感应淬灭细菌的原位分离与筛选

【背景】许多革兰氏阴性细菌通常以N-酰基高丝氨酸内酯(N-acylhomoserine lactones,AHLs)作为群体感应主要的信号分子。【目的】从土壤中筛选和鉴定新型群体感应淬灭细菌。【方法】通过"垫圈法"从土壤中原位培养分离细菌,采用琼脂条法、报告菌平板法及β-半乳糖苷酶活性测定筛选群体感应淬灭细菌,根据16S rRNA基因序列同源性分析确定菌株系统发育地位。【结果】从不同地区土样中原位培养共分离获得细菌502株。以根癌土壤杆菌Agrobacterium tumefaciens NTL4 (pZLR4)作为报告菌,最终得到11株具有较强降解AHLs能力的细菌,包括假单胞菌5株、不动杆菌4株、变形杆菌和莱茵海默氏菌各1株。大部分细菌可完全降解N-3-羰基十二酰基高丝氨酸内酯(3OC12-HSL),部分细菌对N-(3-氧代己酰)高丝氨酸内酯(3OC6-HSL)和N-3-氧代辛酰高丝氨酸内酯(3OC8-HSL)具有一定降解活性。【结论】Proteus和Rheinheimera可降解AHLs,为今后防治依赖群体感应的植物细菌病害提供新型生防资源。     

群体感应抑制活性海洋细菌的筛选与鉴定

从黄海青岛海域海洋污泥中分离纯化微生物菌株,然后采用紫色色杆菌(Chromobacterium violaceum) 为指示菌株,检测其代谢产物的群体感应(Quorum sensing) 抑制活性,并对具有抑制功能的细菌菌株进行16S rDNA分子鉴定及生理生化特征分析.结果表明,1株蜡样芽孢杆菌和1株水莱茵海默氏菌具有较强的细菌群体感应抑制活性,分别命名为Bacillus cereus QSI01和Rheinheimera aquimaris QSI02.从海洋环境中筛选的具有细菌群体感应抑制活性的菌株,为以致病菌群体感应系统为靶点的新型药物的研发提供了菌种资源.     

An alkalophilic laccase from Rheinheimera species isolate: Production and biobleaching of kraft pulp

Medium optimization was carried out to enhance laccase production from a novel Rheinheimera species, isolated from industrial effluent. Out of the 15 variables tested by Placket–Burman design (PBD)—yeast extract, soyabean meal, and peptone were the positively significant ones, enhancing laccase production. Both simple and complex sugars showed a negative effect on laccase production. Central composite design (CCD) of experiments, using the three positively significant variables in combinations, showed that laccase production was not affected by molar carbon, molar nitrogen levels or molar C/N ratio. Maximum laccase yield of 2.5 × 10⁵ nkat L^?1, 31 fold enhancement over the unoptimized medium, was achieved when soyabean meal (0.6%) was used alone as medium showing that laccase production was substrate dependent. Laccase was used, in the presence of 2 mM ABTS, for the biobleaching of eucalyptus kraft pulp resulting in kappa number reduction by 20% and brightness increase by 2.9%. Biobleaching improved further by sequential application of an alkalophilic xylanase (X) and laccase‐ABTS system (LAS) that decreased kappa number by 10, 15, and 35%, increased brightness by 2.7, 3.2, and 5.9% as compared to X treated, LAS treated and untreated control, respectively. XLAS treatment resulted in 15, 13, 10.9% increase in burst factor, tear factor, and viscosity with a 20% reduced consumption of elemental chlorine and hypochlorite. © 2012 American Institute of Chemical Engineers Biotechnol. Prog., 2012     

Raw starch–degrading α‐amylase from Bacillus aquimaris MKSC 6.2: isolation and expression of the gene,bioinformatics and biochemical characterization of the recombinant enzyme

Aims

The aims were to isolate a raw starch–degrading α‐amylase gene baqA from Bacillus aquimaris MKSC 6.2, and to characterize the gene product through in silico study and its expression in Escherichia coli.

Methods and Results

A 1539 complete open reading frame of a starch–degrading α‐amylase gene baqA from B. aquimaris MKSC 6·2 has been determined by employing PCR and inverse PCR techniques. Bioinformatics analysis revealed that B. aquimaris MKSC 6.2 α‐amylase (BaqA) has no starch‐binding domain, and together with a few putative α‐amylases from bacilli may establish a novel GH13 subfamily most closely related to GH13_1. Two consecutive tryptophans (Trp201 and Trp202, BaqA numbering) were identified as a sequence fingerprint of this novel GH13 subfamily. Escherichia coli cells produced the recombinant BaqA protein as inclusion bodies. The refolded recombinant BaqA protein degraded raw cassava and corn starches, but exhibited no activity with soluble starch.

Conclusions

A novel raw starch–degrading B. aquimaris MKSC 6.2 α‐amylase BaqA is proposed to be a member of new GH13 subfamily.

Significance and Impact of the Study

This study has contributed to the overall knowledge and understanding of amylolytic enzymes that are able to bind and digest raw starch directly.