A Molecular Dynamics Investigation of Chain Conformational Changes In Compressed Bilayers

Abstract

The conformations of the chains constituting the hydrophilic component of alkyl monolayers and bilayers are investigated by performing molecular dynamics atomistic simulations on these systems at different temperatures. Several monitoring techniques are used to reveal the chain conformations, including atom pair radial distribution functions, evolutions of the torsional angles over thousands of timesteps, frequency distributions of the torsionl angles and ‘snapshot’ plots of the atomic configurations. These methods consistently testify to the stability of the trans (fully extended) character of the strain-free alkyl chains up to room temperature. The chains retain much of this conformation even when the layers are compressed by the application of pressure, to which the chains respond by ‘folding’ at the ends attaching them to the substrate planes while maintaining directions which are mainly normal to these planes. A non-zero gap between the layers is also maintained. A pressure of about 50 kbar abruptly causes all motion in the chains to cease, resulting in a highly ordered lattice structure.     

Structure of the abdominal receptor responsive to internally applied pressure in the blood-feeding insect,Rhodnius prolixus

Summary The sensory receptor responsive to pressure applied internally to the ventral abdominal body wall of the blood-feeding insects, Rhodnius prolixus, is a single sense cell containing, at its distal end, a cilium enclosed within a scolopale, a densely staining structure characteristic of insect scolopidial sensilla. A small spherical structure lies within a dilation near the midregion of the cilium, and contains nine heavily staining bodies, the position of each corresponding to a pair of microtubules in the cilium. Proximal to the dilation, the microtubules are organized in a ring of nine pairs with one microtubule of each pair associated with dyneinlike arms. Dastal to the dilation a central pair of microtubules is present, but dyneinlike arms are absent. The scolopale cell, which gives risc to the scolopale, has cytoplasmic invaginations that form an elaborate array of extracellular compartments surrounding the body wall of the sense cell. These compartments may serve to dampen high frequency vibrations permitting the receptor to respond to pressure exerted by touch, an attribute in keeping with the receptor's proposed function of detecting abdominal distension related to the size and movement of the stomach.     

Pressure chamber measurements using two wheat leaves

Summary The most widely used technique of leaf water potential measurements is with the Scholander pressure chamber. Representative leaf water potential values require many determinations on individual leaves and this can be time consuming in large fields or experiments with multiple treatments. This paper describes a method of obtaining a mean value more rapidly, by using two leaves in the pressure chamber at the same time, but recording the end point of each leaf separately.     

Determination of the hydraulic conductivity of Lamprothamnium by use of the pressure clamp

By use of the pressure-clamp technique, the hydraulic conductivity of the brackish-water alga Lamprothamnium was found to be 5·10^-6 cm s^-1 bar^-1. The dimensions of the internodes are so small that it is possible, for the first time, to measure a complete volume relaxation upon clamping the turgor pressure to a preset value by a feedback control of the pressure probe. As theoretically predicted, the values of the hydraulic conductivity obtained from the initial slope of the volume relaxation induced by the pressure clamp are in agreement (within experimental error) with those obtained from the half-time of the relaxation process. The cell volume also obtained from the analysis of the volume relaxation is the osmotically effective cell volume and is therefore slightly smaller than the value obtained by taking the dimensions of the cell including the cell wall.Abbreviations and symbols Lp hydraulic conductivity - P turgor pressure - S_v initial slope of volume relaxion - T_1/2 half-time of volume relaxation Dedicated to Professor Dr. H. Ziegler on the occasion of his 60th birthday     

水稻伸长生长的数学模型

水稻地上部诸器官的伸长生长,可以分为3个阶段和两个过渡期．器官在前期的凹型曲线生长为加速生长（定为第1阶段）,中期的直线生长为等速生长（第2阶段）,后期的凸型曲线生长为减速生长（第3阶段）;每两个阶段临界处均存在特殊的生长过程,前面的定为第1过渡期,做变加速生长,后面的定为第2过渡期,做变减速生长.组成器官的各个细胞的伸长生长,也可以分为前期凹型曲线阶段、中期的直线阶段以及这两个阶段临界处的过渡期.运用类比原理推断;细胞在凹型曲线阶段,其原生质的膨压大于壁压,而且这两个压差始终维持稳定,这就使细胞做等加速生长;细胞经过过渡期的变加速生长过渡到直线生长阶段,在这个阶段中,膨压大小与壁压相等,这就使细胞以过渡期最末的生长速度做等速生长;最后壁压大于膨压,而且这两个相差压会阻止细胞的“惯性”生长直至停止生长,其结果产生减速生长．     

Turgor pressure and water transport properties of suspension-cultured cells of Chenopodium rubrum L.

The turgor pressure and water relation parameters were determined in single photoautotrophically grown suspension cells and in individual cells of intact leaves of Chenopodium rubrum using the miniaturized pressure probe. The stationary turgor pressure in suspension-cultured cells was in the range of betwen 3 and 5 bar. From the turgor pressure relaxation process, induced either hydrostatically (by means of the pressure probe) or osmotically, the halftime of water exchange was estimated to be 20±10 s. No polarity was observed for both ex- and endosmotic water flow. The volumetric elastic modulus, , determined from measurements of turgor pressure changes, and the corresponding changes in the fractional cell volume was determined to be in the range of between 20 and 50 bar. increases with increasing turgor pressure as observed for other higher plant and algal cells. The hydraulic conductivity, Lp, is calculated to be about 0,5–2·10^–6 cm s^–1 bar^–1. Similar results were obtained for individual leaf cells of Ch. rubrum. Suspension cells immobilized in a cross-linked matrix of alginate (6 to 8% w/w) revealed the same values for the half-time of water exchange and for the hydraulic conductivity, Lp, provided that the turgor pressure relaxation process was generated hydrostatically by means of the pressure probe. Thus, it can be concluded that the unstirred layer from the immobilized matrix has no effect on the calculation of Lp from the turgor pressure relaxation process, using the water transport equation derived for a single cell surrounded by a large external volume. By analogy, this also holds true for Lp-values derived from turgor pressure changes generated by the pressure probe in a single cell within the leaf tissue. The fair similarity between the Lp-values measured in mesophyll cells in situ and mesophyll-like suspension cells suggests that the water transport relations of a cell within a leaf are not fundamentally different from those measured in a single cell.     

The fluorescent monomeric protein Kusabira Orange. Pressure effect on its structure and stability

The structure and stability of the fluorescent protein monomeric Kusabira Orange (mKO), a GFP-like protein, was studied under different pressure levels and in different chemical environments. At different pH values (between pH 7.4 and pH 4.0) and under a pressure up to 600 MPa (at 25 °C), mKO did not show significant fluorescence spectral changes, indicating a structural stability of the protein. In more extreme chemical conditions (at pH 4.0 in the presence of 0.8 M guanidine hydrochloride), a marked reduction of mKO fluorescence intensity emission was observed at pressures above 300 MPa. This fluorescence emission quenching may be due to the loss of the intermolecular bonds and, consequently, to the destructuration of the mKO chromophore structure. Since the electrostatic and hydrophobic interactions as well as the salt bridges present in proteins are usually perturbed under high pressure, the reduction of mKO fluorescence intensity emission is associated to the perturbation of the protein salt bridges network.     

肾神经在扩张心房时对尿量和尿钠排出的作用

单侧肾去神经的麻醉狗,用乳胶小囊扩张肺静脉-心房连接部,观察到神经完好肾的尿流量与排钠量均显著增加(P<0.01);去神经肾的尿流量仍显著增加(P<0 01),但排钠量无明显变化(P>0.05);两侧肾的肾小球滤过率(GFR)及肾血浆流量(RPF)均保持稳定;神经完好肾的静脉血浆肾素活性(PRA)及血管紧张素Ⅱ水平(PAⅡ)均明显降低,PAⅡ降低的幅度与尿流量增加的幅度无相关(r=-0.2975,P>0.05);与排钠量增加的幅度也无相关(r=-0.2359,P>0.05);去神经肾的PRA和PAⅡ都没有显著变化。说明在刺激心房感受器引起的利尿与尿钠排泄的反应中,肾神经主要促进肾对尿钠的排出。肾神经的这种作用既不是通过改变GFR和RPF,也不是抑制肾素的释放,而可能是由于直接影响肾小管对钠的重吸收。     

Data Processing Techniques May Influence Numerical Results and Interpretation of Single Leg Stance Test

Purposeto evaluate how different data sampling and different analysis methods may effect numerical results and interpretation of single leg stance test using parameters derived from CoP trajectories.MethodsThirty healthy active subjects were recruited for this study on voluntary. Each participant was asked to stand as still as possible for 20 s on the dominant limb, with the supporting foot placed on the force platform. Balancing task in two conditions, with eyes open (EO) and closed (EC). Three trials were collected for each condition.Medial-lateral and anterior-posterior CoP force platform data were obtained and downsampling techniques was applied to get data at original (500 Hz), 100 Hz and 20 Hz of sampling frequencies.Time series data were then analysed to get CoP variables including medial-lateral total path, anterior-posterior total path, total path, maximal excursion for the ML plane and maximal excursion for the AP plane. Sway area was evaluated as 95% confidence ellipse area (CEA) and as 95% prediction ellipse area (PEA)Main findingsSignificant different results were obtained for the same variable evaluated at different sampling frequency. In addition, at all sampling frequencies variables were significantly different (p.<0.05) between EO and EC conditions. High correlation (>0.9) between the same CoP variable calculated at different sampling frequencies was found for all CoP variables. Regarding sway area calculation, both methods were able to distinguish between EO and EC conditions and high correlation was found between CEA and PEA methods.ConclusionOverall results of this study demonstrated the importance of reporting data processing techniques, which includes sampling frequency and variable calculation methods, as they shown to influence one leg stance CoP results, thus data analysed in different manner cannot be directly compared. However, for the variables included in the study, researchers can choose preferred data collection and data analysis methods as they all return same data analysis interpretation as long as they keep consistency in the method.     

Survival and growth of two heterotrophic hydrothermal vent archaea, <Emphasis Type="Italic">Pyrococcus</Emphasis> strain GB-D and <Emphasis Type="Italic">Thermococcus fumicolans</Emphasis>, under low pH and high sulfide concentrations in combination with high temperature and pressure regimes

Growth and survival of hyperthermophilic archaea in their extreme hydrothermal vent and subsurface environments are controlled by chemical and physical key parameters. This study examined the effects of elevated sulfide concentrations, temperature, and acidic pH on growth and survival of two hydrothermal vent archaea (Pyrococcus strain GB-D and Thermococcus fumicolans) under high temperature and pressure regimes. These two strains are members of the Thermococcales, a family of hyperthermophilic, heterotrophic, sulfur-reducing archaea that occur in high densities at vent sites. As actively growing cells, these two strains tolerated regimes of pH, pressure, and temperature that were in most cases not tolerated under severe substrate limitation. A moderate pH of 5.5–7 extends their survival and growth range over a wider range of sulfide concentrations, temperature and pressure, relative to lower pH conditions. T. fumicolans and Pyrococcus strain GB-D grew under very high pressures that exceeded in-situ pressures typical of hydrothermal vent depths, and included deep subsurface pressures. However, under the same conditions, but in the absence of carbon substrates and electron acceptors, survival was generally lower, and decreased rapidly when low pH stress was combined with high pressure and high temperature. Electronic supplementary material Supplementary material is available in the online version of this article at and is accessible for authorized users.