Dietary shifts,niche relationships and reproductive output of coexisting Kestrels and Long-eared Owls

Summary Food samples of breeding Kestrels (Falco tinnunculus) and Long-eared Owls (Asio otus) were collected in the peak and low phase of their preferred prey (Microtus voles) in western Finland. Diets of pairs that bred as neighbours (1 km) with interspecifics were compared with those of non-neighbours. In both species, neighbouring pairs fed less on Microtus voles and more on alternative prey than did non-neighbours. Competition theory predicts that diet overlap should be lower during prey shortage and that diet similarity should be especially reduced in neighbouring pairs. Observations were consistent with expectations: diet similarity was lower in the low vole years and neighbouring pairs showed less diet overlap that non-neighbours. Differences in habitat composition and prey availability at the sample sites should not confuse the results. In addition to the high diet similarity, hunting habitats and nest sites of the species overlapped almost completely; they only showed clear temporal segregation in hunting. Probably because of food competition, the neighbouring pairs of both species produced significantly fewer young than the non-neighbours. These results contrast with the view that the diet composition and dietary shift of rodent-feeding predatory birds can be interpreted in terms of simple opportunistic foraging. In the breeding season, interspecific competition for food seems to be an important factor that affects the niches of these species, especially in northern areas, where the seasonal low phase of voles in spring and the number of alternative prey are lower than in more southern areas.     

Competition and overlap of Oryzaephilus surinamensis and Plodia interpunctella populations under condition of stored date fruits

Plodia interpunctella and Oryzaephilus surinamensis are found in food storehouses including dates and palm storages. The current study aimed to determine competition and overlap potentials of the two pests of date fruits. Time series models were used to study two species populations and logistic growth model to estimate the effect of density of the species. The results revealed the environmental capacities of O. surinamensis and P. interpunctella were 433 and 1610 (maximum number per 20 g), respectively, and the population growth rates (r) were 1.2 and 1.3, respectively. Ecological balances of the two species were close to each other from the first to the third week. The population of O. surinamensis decreased in the fourth week of the competition. The highest population balance of the two species was in the 14th week. The potential of exploitable ecological niches (e_ij) and the amount of non-exploited ecological niches by any species (z_ij) for O. surinamensis was higher than for P. interpunctella from the 8th week untill the end of sampling period. The overlap of ecological niches in the two species (D) ranged from 0.94 to 1, indicating a complete overlap of temporal activity in the two populations on date palm. The current results of this study can be used by integrated pest management specialists. Information over the effects of species competition on population dynamics and their coexistence can be used to predict population status and to adopt simple pest control methods.     

Mapping a forest mosaic – A comparison of vegetation and bird distributions using geographic boundary analysis

Many areas of ecological inquiry require the ability to detect and characterize change in ecological variables across both space and time. The purpose of this study was to investigate ways in which geographic boundary analysis techniques could be used to characterize the pattern of change over space in plant distributions in a forested wetland mosaic. With vegetation maps created using spatially constrained clustering and difference boundary delineation, we examined similarities between the identified boundaries in plant distributions and the occurrence of six species of songbirds. We found that vegetation boundaries were significantly cohesive, suggesting one or more crisp vegetation transition zones exist in the study site. Smaller, less cohesive boundary areas also provided important information about patterns of treefall gaps and dense patches of understory within the study area. Boundaries for songbird abundance were not cohesive, and bird and vegetation difference boundaries did not show significant overlap. However, bird boundaries did overlap significantly with vegetation cluster boundaries. Vegetation clusters delineated using constrained clustering techniques have the potential to be very useful for stratifying bird abundance data collected in different sections of the study site, which could be used to improve the efficiency of monitoring efforts for rare bird species.     

Rapid and Efficient Gene Splicing Using Megaprimer-Based Protocol

Megaprimer-based methodology has been widely applied in site-directed mutagenesis, but rarely used in gene splicing. In this article, we describe a modification of the megaprimer PCR method, which can efficiently create and amplify a specific ligated chimeric gene segment in a PCR reaction and under a common PCR program that is widely used by researchers. More importantly, this modified method for splicing two or more gene fragments together revealed the mechanism of the megaprimer PCR method, by elucidating the key factor in the megaprimer-based protocol. In this method, the denatured megaprimer divided into two strands. One strand was used as template DNA to regenerate megaprimer and the other strand was used as an oligonucleotide primer to create a ligated chimeric gene product. In this article, we detail the modified megaprimer protocol for creating and amplifying these chimeric gene products, including a specific protocol for large chimeric gene products. We also provide additional tips to increase specificity and efficiency of the protocols. In conclusion, the improved megaprimer PCR protocol is a simple, broadly applicable protocol for splicing two different gene fragments together without relying on restriction sites. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

基于滑动窗口的原核转录起始位点计算定位方法

转录起始位点的计算定位是基因转录调控研究的重要内容,但现有方法的识别性能较低。文章作者在已有原核启动子识别算法的基础上,提出了一种基于滑动窗口的原核转录起始位点计算定位方法,通过在合理限定的定位范围内对序列进行滑动扫描,来预测转录起始位点的位置。首先根据窗口序列的交迭组分特征和启动子其它特征分别建立二次判别分类器,用其计算对应位置的似然得分,再利用转录起始位点与翻译起始位点的间隔经验分布信息对似然得分进行修正,最后依照似然得分的分布情况由阈值定位算法确定预测位置。对大肠杆菌真实序列数据的测试结果表明,该定位算法可实现对真实转录起始位点位置的有效预测,与已有算法相比,当敏感性指标同为0.85左右时,特异性指标可从0.20提高至0.65,从而使得定位准确率提高了约20个百分点。     

The feeding ecology of freshwater fishes in two rivers of the Australian wet tropics

Synopsis The fish fauna of the Mulgrave and South Johnstone rivers is diverse relative to other Australian rivers and this study examines the diets of many of the resident fish species. Most species were small (< 200 g), and although considerable overlap in the size of the mouth was observed, closely related species tended to have non-overlapping ranges in mouth size. Five trophic guilds were recognised and substantial discrimination between guilds on the basis of body size was noted. Small fishes (< 5 gm body weight) consumed a variety of insect larvae and small terrestrial insects. The diet of large fish was characterised by the presence of large aquatic invertebrates and fish. A third group of intermediate sized fishes (10–20 gm), which included the 0+ age class of three species of large fish, also consumed aquatic invertebrates but only a small proportion of terrestrial invertebrates. Vegetable material was present in the diet of all three guilds but the source of that material varied. In groups 1 to 3 above, the source of that material was desmids and diatoms, aquatic macrophytes or filamentous alga respectively. A fourth guild fed predominately on detritus and some bivalve molluscs, and a fifth group, containing only two species, fed feavily on gastropod molluscs. The extent of dietary overlap varied both within- and between-rivers. In habitats dominated by low water velocities and sandy substrates, resource partitioning was pronounced and the number of fishes with empty or near empty guts was high, suggesting that food was more limited in this type of habitats. Little resource partitioning was observed in habitats characterised by a coarse substrate, high water velocity and dense riparian canopy.     

肝纤维化程度及自身抗体表达对熊去氧胆酸单药治疗自身免疫性肝病重 叠综合征患者临床疗效的影响

目的:肝纤维化程度及自身抗体表达对熊去氧胆酸单药治疗自身免疫性肝病重叠综合征患者临床疗效的影响。方法:回顾性收集2007年-2011年住院的20例做过肝穿活检的经熊去氧胆酸单药治疗达到满意效果的自身免疫性肝炎和原发性胆汁性肝硬化重叠综合征患者的临床资料。结果:20例患者中,12例患者(60%)的肝穿标本活检评估处于肝纤维化S3或S4期,其初诊时基线特征与肝纤维化处于S0-S2期的患者基线特征无统计学差异。此外,该20例患者的血清抗平滑肌抗体的阳性率较低(1/20)。结论:肝脏纤维化程度不会引起熊去氧胆酸治疗效果的下降。     

Segregation by species and size classes of rainbow trout,Salmo gairdneri,and Sacramento sucker,Catostomus occidentalis,in three California streams

Synopsis The hypothesis that Sacramento suckers, Catostomus occidentalis, compete with rainbow trout, Salmo gairdneri, for space in streams was examined by measuring microhabitat utilization of both species in three California streams. Two streams were similar in most respects except one contained only trout and one contained trout and a large population of suckers. The third stream, formed by the union of the first two, contained trout and a small population of suckers. The species overlapped in five of the six microhabitat variables measured: maximum depth, mean water column velocity, focal point velocity, surface water velocity, and substrate type. However, the species had strong vertical segregation; there was little overlap between species in focal point depth. Mean focal point velocities were also significantly different. Suckers roamed over and generally remained in contact with the bottom while trout held position in the water column. Microhabitat utilization by trout in the stream without suckers was similar to in the stream with a higher sucker density. Differences in microhabitat utilization by trout between the third stream and the other two was attributed to the larger size of the third stream. Both sucker and trout showed a similar within-species segregation of size classes - fish under 50 mm in length sought shallow water. Size-specific trends indicated ontogenic shifts in resource utilization which reduced overlap within species. These results suggest that competition for space between trout and suckers was not a major factor regulating microhabitat utilization of trout, although the possibility that larger suckers may displace small trout needs further study.