Amplification of noncoding chloroplast DNA for phylogenetic studies in lycophytes and monilophytes with a comparative example of relative phylogenetic utility from Ophioglossaceae

Noncoding DNA sequences from numerous regions of the chloroplast genome have provided a significant source of characters for phylogenetic studies in seed plants. In lycophytes and monilophytes (leptosporangiate ferns, eusporangiate ferns, Psilotaceae, and Equisetaceae), on the other hand, relatively few noncoding chloroplast DNA regions have been explored. We screened 30 lycophyte and monilophyte species to determine the potential utility of PCR amplification primers for 18 noncoding chloroplast DNA regions that have previously been used in seed plant studies. Of these primer sets eight appear to be nearly universally capable of amplifying lycophyte and monilophyte DNAs, and an additional six are useful in at least some groups. To further explore the application of noncoding chloroplast DNA, we analyzed the relative phylogenetic utility of five cpDNA regions for resolving relationships in Botrychium s.l. (Ophioglossaceae). Previous studies have evaluated both the gene rbcL and the trnL(UAA)-trnF(GAA) intergenic spacer in this group. To these published data we added sequences of the trnS(GCU)-trnG(UUC) intergenic spacer + the trnG(UUC) intron region, the trnS(GGA)-rpS4 intergenic spacer+rpS4 gene, and the rpL16 intron. Both the trnS(GCU)-trnG(UUC) and rpL16 regions are highly variable in angiosperms and the trnS(GGA)-rpS4 region has been widely used in monilophyte phylogenetic studies. Phylogenetic resolution was equivalent across regions, but the strength of support for the phylogenies varied among regions. Of the five sampled regions the trnS(GCU)-trnG(UUC) spacer+trnG(UUC) intron region provided the strongest support for the inferred phylogeny.     

Drivers of vegetative dormancy across herbaceous perennial plant species

Vegetative dormancy, that is the temporary absence of aboveground growth for ≥ 1 year, is paradoxical, because plants cannot photosynthesise or flower during dormant periods. We test ecological and evolutionary hypotheses for its widespread persistence. We show that dormancy has evolved numerous times. Most species displaying dormancy exhibit life‐history costs of sprouting, and of dormancy. Short‐lived and mycoheterotrophic species have higher proportions of dormant plants than long‐lived species and species with other nutritional modes. Foliage loss is associated with higher future dormancy levels, suggesting that carbon limitation promotes dormancy. Maximum dormancy duration is shorter under higher precipitation and at higher latitudes, the latter suggesting an important role for competition or herbivory. Study length affects estimates of some demographic parameters. Our results identify life historical and environmental drivers of dormancy. We also highlight the evolutionary importance of the little understood costs of sprouting and growth, latitudinal stress gradients and mixed nutritional modes.     

Evaluation of atpB nucleotide sequences for phylogenetic studies of ferns and other pteridophytes

Inferring basal relationships among vascular plants poses a major challenge to plant systematists. The divergence events that describe these relationships occurred long ago and considerable homoplasy has since accrued for both molecular and morphological characters. A potential solution is to examine phylogenetic analyses from multiple data sets. Here I present a new source of phylogenetic data for ferns and other pteridophytes. I sequenced the chloroplast gene atpB from 23 pteridophyte taxa and used maximum parsimony to infer relationships. A 588-bp region of the gene appeared to contain a statistically significant amount of phylogenetic signal and the resulting trees were largely congruent with similar analyses of nucleotide sequences from rbcL. However, a combined analysis of atpB plus rbcL produced a better resolved tree than did either data set alone. In the shortest trees, leptosporangiate ferns formed a monophyletic group. Also, I detected a well-supported clade of Psilotaceae (Psilotum and Tmesipteris) plus Ophioglossaceae (Ophioglossum and Botrychium). The demonstrated utility of atpB suggests that sequences from this gene should play a role in phylogenetic analyses that incorporate data from chloroplast genes, nuclear genes, morphology, and fossil data.     

SEM studies on vessels in ferns. 11. Ophioglossum

With scanning electron microscopy (SEM), the nature of metaxylem vessel elements and tracheids was examined in Ophioglossum crotalophomides, 0. pendulum subsp. falcatum , and 0. vulgatum roots and rhizomes. Vessels were identified in all species. End walls of vessel elements, which bear perforations, are like lateral wall pitting of those elements in the secondary wall framework and differ only in absence of pit membranes or presence of pit membrane remnants. Some of the perforations contain pit membrane remnants that have large pores, small porosities, or are threadlike or weblike in structure. Dimorphic perforations were found in some vessel elements of rhizomes of 0. pendulum subsp. falcatum. Tracheids are very likely present in addition to vessels in all three species. The secondary wall framework of both tracheids and vessels is basically scalariform, although deviations in pattern are present. Vessel elements of Ophiglossum are entirely comparable to those of leptosporangiate ferns.     

Observations on bipolar disjunctions of moonwort ferns (Botrychium,Ophioglossaceae)

Peter Raven, in 1963, included two fern taxa of the genus Botrychium in his list of plant species exhibiting American amphitropical bipolar disjunctions. He attributed the southern hemisphere occurrences to post‐Pleistocene long‐distance dispersal from counterparts in the northern hemisphere, probably assisted by annual bird migrations between the disjunct areas. Using genetic evidence gathered through worldwide analyses of phylogenetic relationship in Botrychium, we now review and reconsider Raven's conclusions. Genetic similarities indicate that South American Botrychium dusenii is an allotetraploid taxon closely related to B. spathulatum, a North American endemic, and that B. lunaria in New Zealand possesses a genotype identical to that of a taxon in North America derived through introgressive hybridization between B. lunaria and an endemic North American species, B. neolunaria. Both North American counterparts exhibit Raven's characteristics of bipolar disjuncts in their occurrence in mountain and coastal meadows, copious production of small propagules (spores in Botrychium), occurrence in habitats frequented by transpolar bird migrants, and ability to found new colonies through inbreeding. We discuss these characteristics in Botrychium and relative to other ferns and suggest further studies on Botrychium and related taxa to address questions of time, number, and mode of bipolar dispersals.     

Effects of inorganic nitrogen sources on spore germination and gametophyte growth in Botrychium dissectum

Abstract. The effects of variations in nitrogen source upon spore germination and gametophyte growth of the eusporangiate fern Botrychium dissectum forma obliquum were investigated. Spore germination and early gametophyte growth were directly related to the oxidation level of the supplied nitrogen source. Nitrate and nitrite inhibited spore germination and at concentrations above 0.035 mol m^-3 prevented it entirely. Ammonium promoted germination well above the levels attained on media without nitrogen. Concentrations of ammonium greater than 0.035 mol m^-3 often resulted in germination above 90%. The growth of young gametophytes from spores was reduced on media without nitrogen or on media with high concentrations of nitrate. Ammonium stimulated the growth of both young and older gametophytes. However, older gametophytes were able to grow on media containing nitrate as the sole nitrogen source. We conclude that a reduced nitrogen source is necessary for spore germination and early growth of Botrychium gametophytes. This requirement has several ecological implications which may be related to the distribution of these ferns and the establishment of mycorrhizal associations.     

中国瓶尔小草科植物孢子形态的研究

利用扫描电镜对中国产瓶尔小草科2属7种的孢子进行了研究,其中包括瓶尔小草属6种,即裸茎瓶尔小草（OphioglossumnudicauleL．f）、尖头瓶尔小草（O．pedunculosumDesv．）、钝头瓶尔小草（O．petiolatumHook）、狭叶瓶尔小草（O．thermaleKom．）、心脏叶瓶尔小草（O．reticulatumL．）和瓶尔小草（O．vulgatumL．）,蛇蕨属1种,即蛇蕨（又名带状瓶尔小草OphiodermapendulaPresl）,对每个种的孢子形态特征进行描述。根据孢子形态特征,我们认为将中国的瓶尔小草科植物分为瓶尔小草属和蛇蕨属两个属是合适的。通过观察,进一步认定孢子外壁的纹饰特征极具分类参考价值,并可以作为种的界限的依据。     

Why are ferns regularly over‐represented on state and provincial rare plant lists?

Several recent studies have suggested that rare species are not randomly distributed throughout plant taxa. This would appear to apply to North American ferns, which are frequently over-represented on local lists of rare plant species. However, such lists often paint a skewed portrait of the true situation because of our tendency to recognize the rarity of well-known and charismatic species while ignoring that of lesser-known or less-appreciated species. In order to verify if this over-representation of ferns is a real and consistent trend throughout local floras in North America, we used data from what we consider to be the most complete and objective available database: NatureServe Explorer ( http://www.natureserve.org/explorer/ ). We compiled data on total vascular plant species, total fern species, as well as rare vascular plant species and rare fern species for each North American subnational (Canadian province or US state) flora. Rare species were defined as those belonging to one of NatureServe's 'at risk' categories. The null hypothesis that the contribution of rare ferns to total rare species did not differ from their contribution to the total vascular flora was assessed using χ². Out of 64 subnational floras, we obtained significantly higher values than expected in 28 cases, and significantly lower in only one case. Similar trends hold true for individual fern families. These tendencies could be related to several factors of anthropogenic, biological, climatological, evolutionary, and geographical origin. However, we believe that the main reason is related to scale, namely the geopolitical units at which rarity is often studied. Our results illustrate one of the problems of a parochial approach to conservation, where the perceived rarity of an entire taxon is exaggerated because of the scale at which rarity is addressed.     

七指蕨科和瓶尔小草科植物的叶表皮特征

在光学显微镜和扫描电子显微镜下,对七指蕨科和瓶尔小草科３个属３种代表植物的叶表皮内外面进行了观察。它们的表皮细胞形状较规则,垂周壁平直或略有弯曲,气孔器长轴与叶片长轴平行或近平行,保卫细胞下陷;但三属叶表皮在表皮细胞形状,     

Isozyme variability among cryptic species of Botrychium subgenus Botrychium (Ophioglossaceae)

The systematics of Botrychium subgenus Botrychium has been controversial, primarily because reduction in frond size and complexity has limited the number of characters available for discrimination of species. The recognition of many polyploid species has magnified the difficulty of classification because allopolyploids are often morphologically intermediate between their progenitor diploids. In order to evaluate species limits and sectional boundaries, we surveyed and compared 16 of the 24 currently recognized species for isozymic variation. Little or no intrapopulational variation was detected, but the variation present was consistent with the hypothesis that Botrychium species are primarily inbreeding. Interspecific comparisons distinguished six diploid species and provided evidence of molecular differentiation between the cryptic sister species B. lunaria and B. crenulatum. Evidence of possible progenitor/descendant relationships was found for certain diploid/polyploid relationships. Using enzyme bands shared between species, realignment of the sectional assignment of several species is proposed. Anomalous banding patterns in certain individuals suggested that gene silencing or homoeologous chromosome pairing might be operating in B. minganense, B. hesperium, and B. matricariifolium. Isozyme data also showed that some populations of species presumed to be uniformly diploid possessed isozyme patterns typical of polyploids. All available molecular data indicate that members of Botrychium subgenus Botrychium are actively evolving at diploid and polyploid levels.