The impacts of invasive Nile tilapia (Oreochromis niloticus) on the fisheries in the main rivers of Guangdong Province,China

Nile tilapia (Oreochromis niloticus) is one of the most widespread invasive fish species, and this species has successfully established populations in the major rivers of Guangdong Province, China. Field surveys and manipulative experiments were conducted to assess the impacts of Nile tilapia on fisheries. We determined that the increase of Nile tilapia in these rivers not only affects the CPUE (catch-per-unit-per-effort) of the fish community and native fish species but also reduces the income of fishermen. In the manipulative experiments, we observed that the growth of native mud carp decreased in the presence of Nile tilapia. Our results suggest that the invasion of Nile tilapia negatively affected the fishery economy and native fish species, and suitable control measurements should be taken.     

Middle paleozoic waulsortian-type mud mounds in Southern Fergana (Southern Tien-Shan,commonwealth of independent states): The shallow-water atoll model

Summary Several Waulsortian-type mud mounds nearly 500 m thick and about 5 km long occur in the Middle Paleozoic carbonate section of the Aktur nappe in the mountains on the right bank of Isfara river. These buildups form a well developed barrier system that stretches along the South Ferganian carbonate platform margin and divides the carbonate complex into a fore-reef and a back-reef part. The time of the mounds' most active growth was from the Late Silurian (Ludlow) to the Middle Devonian (Eifel). Three main facies types can be recognized in the mud mounds: 1. micritic core facies, 2. sparitic flank facies and 3. loferitic capping facies. The central massive or crudely bedded part of the mounds consists of white or light grey clotted micrite. Macrofossils are rare. The sparitic flank facies in contrast consists of coarse and densely packed crinoidal wackestone-floatstones with some brachiopod shell debris. Solitary rugose corals, tabulate corals, stromato-poroids and fragments of mollusks are also abundant. The tops of the mounds are usually covered with loferitic pelmicrites or oolitic grainstone caps. Stromatactis-like structures are very rare and poorly developed in the South Ferganian mud mounds. However, almostin all such mounds horizons of calcitic breccias can be found. In order to explain all the features found in the Fergana mounds an ‘atoll-like’ model has been proposed which starts the evolution of the mud mounds with a small nucleus bioherm. The main stage of the evolution corresponds to an atoll-like structure developing on the surface of shallow water platforms. White clotted micrite of the mound core facies is interpreted as a accumulation of fine-grained sediment in an inner lagoon flanked by crinoidal bar deposits. The mound flank facies represents the atoll rim deposits from where the carbonate mud is derived. The capping loferitic facies is considered as tidal flat deposit that developed on top of the buildups during the last stage of its evolution. The knoll shape of the mounds is explained by the retreat of the atoll flanking crinoidal bars back into the inner lagoon during the rise in sea level. Stromatactis-like structures of small cavities filled with sparry calcite owe their existence to burrowing organisms. Calcitic breccias are interpreted as paleokarst collapse breccias. They indicate that the tops of the mud mound became subaerially exposed. Other evidence for a subaerial exposure can be seen in the occurrence of Variscian ‘black and white’ limestone gravel on the tops of some mud mounds. According toWard et al. (1970) these sediments were produced above the sea level at the edge of hypersaline lakes situated on islands.     

The sexual function of wallowing in male wild boar (Sus scrofa)

The wild boar (Sus scrofa) is a medium-sized ungulate that produces a large variety of marks. Traditionally, wallowing is an activity that has fundamentally been related to several processes such as thermoregulation, reduction in the number of ectoparasites or disinfection of wounds in the skin of males resulting from fights to reach females. In this study, I analysed another possible function of wallowing in free-ranging wild boar populations when temperatures are low and parasitic numbers are not significant. The results indicate that during the sampling time, from October to February, the number of wild boars with a mud layer on their skin was 47, out of a total of 558 wild boar analysed. Of these 47 wild boars, 44 were males and within this group, 40 individuals were adult males. The wallowed males were bigger and older than non-wallowed males hunted at the same time. In addition, I found that males wallowed mainly during autumn (90.9% of all cases). In the total number of wild boars analysed, I did not notice individuals with wounds resulting from fights other than from the hunting day. On the other hand, the analysis of the females reproductive systems indicated that the rut period took place during the last days of October and the first days of November. From these results, the coincidence of the rut period with the maximum of wallowing in adult males could be indicative of a sexual function of this activity.     

Molecular cloning and characterization of crustin from mud crab<Emphasis Type="Italic"> Scylla paramamosain</Emphasis>

Antimicrobial peptides (AMPs) are important components of the host innate immune response against microbial invasion. In the present study, we report the identification and characterization of a crustin (CrusSp) from the hemocyte of mud crab, Scylla paramamosain using an expressed sequence tag (EST) and rapid amplification cDNA end (RACE) approaches. Analysis of the nucleotide sequence revealed seven different variances of the CrusSp cDNA in mud crab. The open reading frame encodes a protein of 111 amino acids with 21 residues signal sequence. The predicted molecular mass of the mature protein (90 amino acids) is 10.27 kDa with an estimated pI of 8.54. Analysis of the protein domain features indicated typical conserved cysteine residues containing a single whey acidic protein (WAP) domain at the C-terminus. A neighbour-joining tree showed that S. paramamosain crustin is closely related to other crustin homologues, and displays the highest similarity to crustin antimicrobial peptide in shore crab Carcinus maenas. Four exons and three introns were identified within the 999 bp genomic DNA sequence of CrusSp. Tissue distribution analysis showed that CrusSp was highly expressed in hemocytes, gills, intestines and muscle but it was not expressed in hepatopancreas and eyestalks. To gain insight into the in vitro antimicrobial activities of CrusSp, the mature peptide coding region was cloned into E. coli for heterologous expression. The recombinant CrusSp could inhibit the growth of gram-positive bacteria but had no inhibition activity against gram-negative bacteria. These results indicated the involvement of CrusSp in the innate immunity of S. paramamosain.     

锯缘青蟹卵黄发生期卵母细胞和卵泡细胞之间的结构变化

通过电镜研究了锯缘青蟹二次卵巢发育过程中卵黄发生期（分为初期和后期）卵母细胞表面的结构和胞质的变化。卵黄发生初期分为：内源性卵黄发生阶段和有卵泡细胞直接参与的外源性卵黄合成阶段,前者特征为：在卵母细胞中充满了内质网泡,在泡内有不同程度的卵黄物质合成,此时在卵母细胞的表面区域,可见很多卵泡细胞向卵母细胞表面迁移,并包围卵母细胞。后者其特征是在卵母细胞的表面,有大量的胞饮小泡出现在卵膜的内面,随着两细胞表面膜的逐步融合和胞饮作用加强最后形成链锁状结构,胞质中靠近卵质周围有卵黄体的积极合成和大更换 脂肪滴积累,在此阶段的后期,卵泡细胞质已基本吸收完毕,卵泡细胞膜和卵母细胞膜融合,某些界面已无膜结构。卵黄发生后期在亲蟹孵出幼体后的第11d至第27d基本结束,此期也主要以外源性卵黄发生为主,在卵母细胞的周围,卵泡细胞迅速扩大,其间分布着大量的大小不同的囊泡和线粒体,在接近卵母细胞表面,还常可见大量的脂肪滴存在。卵泡细胞与卵母细胞间其膜结构完全消失,从而可使滤泡大片细胞质直接融入卵母细胞中,以后随着卵黄发生的进一步发展,卵母细胞与卵泡细胞的交界面逐步形成一个网状的膜结构屏障,同时在卵巢中可见正在降解的卵母细胞,在卵黄发生近结束以后,在卵母细胞的表面,逐步形成两层卵膜,这时的卵母细胞质中几乎充满了卵黄体和脂肪滴。     

新疆泥火山细菌群落PCR-SSCP 分析

采用单链构象多态性(SSCP)技术, 以16S rDNA 基因的V3 区为靶对象, 分析泥火山细菌多样性及其群落结构。通过对泥火山不同月份的不同深度土样DNA 提取后, 针对16S rDNA 进行PCR 扩增出236 bp 大小片段, 通过SSCP 电泳对泥火山细菌进行季节性多样性分析, 并对主要条带进行克隆分析。结果显示: 新疆泥火山细菌不同季节多态性明显, 而且这种多态性容易受生态和气候的影响; 假单胞菌属是泥火山土壤优势菌群, 在泥火山区土壤中广泛分布, 受生态和气候环境影响较小。     

Vent and mound rugose coral associations from the Middle Devonian of Hamar Laghdad (Anti-Atlas, Morocco)

Peculiar associations of small, solitary, deep-water rugose corals are described from the Middle Devonian buildups situated in the easternmost part of Hamar Laghdad area of southern Morocco. The most of them are monospecific and consist of simplified taxon “Amplexus” florescens but one is polyspecific and composed of specimens belonging to four different species representing three families. These rugosan associations form isolated nest-like aggregations where numerous densely packed specimens are arranged mostly in life position. The polyspecific and two monospecific associations are interpreted as growing in close proximity to venting fields. They reveal a unique “calice-in-calice” recolonization pattern expressed by successive settlement of juvenile specimens in the calice of dead individuals. This pattern was presumably a consequence of selective survival of coral larvae settling in extreme vent habitats. Although, the “calice-in-calice” pattern is common in both, mono- and polyspecific associations, there are differences expressed in the character of larval attachments and various types of the calice fillings. The trophic interaction between corals and ostracods is discussed. Additionally, associations of “Amplexus” florescens, not displaying “calice-in-calice” pattern of growth have been found within the mound where polyspecific association occurs. These are interpreted as growing away from venting fields. Comparisons of Amplexus-type coral faunas with the other North African and European corals allow the classification of these ampleximorph rugosan taxa as characteristic biotic components of the Middle Devonian mound environments influenced by venting activity. Two new genera and species, Weyeraia prima and Vesiculolasma erfoudi, are introduced.     

Sedimenticola hydrogenitrophicus sp. nov. a chemolithoautotrophic bacterium isolated from a terrestrial mud volcano,and proposal of Sedimenticolaceae fam. nov. in the order Chromatiales

Chemolithoautotrophic microorganisms can play a significant role in the biogeochemical cycling of elements in deep-subsurface-associated environments. A novel facultatively anaerobic lithoautotrophic bacteria (strains SB48^T and SN1189) were isolated from terrestrial mud volcanoes (Krasnodar Krai, Russia). Cells of the strains were straight motile rods. Growth was observed at temperatures up to 35 °C (optimum at 30 °C), pH 6.0–8.5 (optimum at pH 7.5) and NaCl concentrations of 0.5–4.0% (w/v) (optimum at 1.5–2.0% (w/v)). The isolates grew chemolithoautotrophically with molecular hydrogen or thiosulfate as an electron donor, nitrate as an electron acceptor and CO₂/HCO₃⁻ as a carbon source. They also grew with organic acids, ethanol, yeast extract and peptone. The isolates were capable of either anaerobic respiration with nitrate or nitrous oxide as the electron acceptors or aerobic respiration under microaerobic condition. The total size of the genome of strains SB48^T and SN1189 was 4.71 and 5.13 Mbp, respectively. Based on phenotypic and phylogenetic characteristics, strains SB48^T and SN1189 represent a novel species of the genus Sedimenticola, S. hydrogenitrophicus (the type strain is SB48^T = KCTC 25568 ^T = VKM B-3680 ^T). The new isolates are the first representatives of the genus Sedimenticola isolated from a terrestrial ecosystem. Based on phylogenomic reconstruction we propose to include the genus Sedimenticola and the related genera into a new family Sedimenticolaceae fam. nov. within the order Chromatiales.     

Molecular cloning and expression analysis of phospholipase Cdelta from mud loach, Misgurnus mizolepis

A gene encoding phosphoinositide-specific phospholipase C (PLC), designated ML-PLCδ, was cloned from mud loach (Misgurnus mizolepis) liver. A complete cDNA encoding ML-PLCδ was isolated by screening the cDNA library of mud loach liver and using the 5′-rapid amplification of cDNA ends (RACE) method. The full-length ML-PLCδ gene contains an open reading frame of 2325 base pairs encoding a 774 amino acid protein with a molecular mass of 88,072 Da; this corresponds to the size of the protein expressed in Escherichia coli BL21 (DE3) using pET28a vector. It contains all of the characteristic domains found in mammalian PLCδ isozymes (PH domain, EF-hands, X–Y catalytic region, and a C2 domain). A homology search revealed that ML-PLCδ shares relatively high sequence identity with mammalian PLCδ1 (51–52%) and catfish PLCδ (64%). The recombinant ML-PLCδ protein expressed as a histidine-tagged fusion protein in E. coli was purified to apparent homogeneity by Ni²⁺-NTA affinity chromatography. The recombinant ML-PLCδ showed a concentration-dependent PLC activity to phosphatidylinositol 4,5-bis-phosphate (PIP₂) and its activity was Ca²⁺-dependent, which was similar to mammalian PLCδ isozymes.     

Comparison of trawled vs untrawled mud seafloor assemblages of fishes and macroinvertebrates at Coquille Bank, Oregon

We report the first quantitative comparison of trawled vs untrawled mud seafloor communities off the west coast of North America. Using a manned submersible, we ran visual transects at Coquille Bank, 25 km off the central coast of Oregon, USA, including six half-hour (mean length 1184 m) transects over mud seafloors 183-361 m deep. The shallowest transects were untrawled, whereas deeper transects were heavily trawled, as evidenced by extensive trawl-door tracks. Differences between trawled and untrawled seafloor assemblages were striking. We observed 23% more fish over untrawled compared to trawled seafloors, and recorded 27 fish species on untrawled bottoms, but only 19 species on trawled seafloors. Regarding benthic invertebrates, density of individuals was 6 times greater on untrawled compared to trawled bottoms. Nonetheless, we observed 11 taxa on trawled seafloors and only 6 taxa on untrawled bottoms. Principal components analysis (PCA) defined the untrawled assemblage as characterized by sea pens, ratfish, sablefish, ronquil, slender sole, and poacher. PCA defined the trawled assemblage as characterized by seastars, hermit crabs, bigfin eelpout, Dover sole, hagfish, and shortspine thornyhead. In untrawled areas, there was no correlation between sea-pen density and total fish density, whereas in trawled areas, there was a marginally inverse correlation between the density of trawl-door tracks and total fish density. The dominant fishes and macroinvertebrates on trawled seafloors are known mobile scavengers that may aggregate along trawl-door tracks. Sea pens that dominated untrawled bottoms are sessile, slow-growing, long-lived species that are likely to recover slowly from physical disturbance. We conclude that the observed differences between trawled and untrawled communities were the result of groundfishing activities rather than local environmental differences. Given that habitat considerations for groundfish management in this region focus exclusively on rocky seafloors, it seems prudent to consider the adverse effects of bottom trawling on mud seafloor ecosystems of the continental shelf and slope.