The effect of cyclic nucleotides on purine biosynthesis and the induction of PRPP synthetase during lymphocyte activation

The activation of lymphocytes has been used to study the regulation of mammalian gene expression. Concanavalin A (Con A) added to mouse spleen lymphocytes in serum-free medium leads to an increase in the rate of DNA synthesis as great as 1000 fold, commencing 20 hr after its addition. Prior to 20 hr, the rate of purine synthesis increases 10–100 fold as measured by accumulation of the purine intermediate, formyl glycineamide ribonucleotide (FGAR). Addition of dibutyryl cyclic GMP to the lymphocyte suspensions results in a 10 fold increase in the rate of DNA synthesis in the absence of Con A and enhances both purine synthesis and DNA synthesis in its presence. The activity of phosphoribosyl pyrophosphate synthetase (PRPP synthetase), an enzyme central to purine and pyrimidine biosynthesis, is increased 2–10 fold during the activation. The increase begins to appear 8 hr after Con A addition and requires concomitant protein synthesis. The induced PRPP synthetase activity is stimulated by the presence of cyclic GMP in the enzyme assay. Addition of dibutyryl cyclic AMP to Con A-stimulated lymphocytes inhibits FGAR production, the stimulation of DNA synthesis, and the appearance of cyclic GMP-sensitive PRPP synthetase. These studies suggest that cyclic nucleotides play a significant role in the molecular mechanism of lymphocyte activation, the regulation of purine biosynthesis, and of eucaryotic genetic expression.     

Antimicrobial defense mechanisms in the horseshoe crab, Limulus polyphemus: preliminary observations with heat-derived extracts of Limulus amoebocyte lysate.

Heat-derived (60°C) extracts of Limulus amoebocyte lysate (LAL) were found to contain potent “broad-spectrum” antimicrobial activity. Additional heating of the LAL extracts to 100°C for 30 min completely inactivated the antimicrobial activity and served as a control. Antimicrobial activity was observed over a temperature range of 0° to 37°C (higher temperatures not tested) with greatest activity at 37°C. Antimicrobial activity of LAL extracts was variable when tested against Gram-negative bacteria of the family Enterobacteriaceae. A twofold concentration of the extracts resulted in a significant decrease in antimicrobial effectiveness. Dialysis of single- and double-strength LAL extracts against deionized water produced a marked and significant enhancement of antimicrobial activity against both resistant and sensitive species, confirming the presence of a dialyzable inhibitor(s). Dialyzed LAL extracts were active against 13 of 14 species of Enterobacteriaceae tested. Two strains of Pseudomonas aeruginosa were susceptible as were two of three Gram-positive cocci tested. Highly sensitive bacterial species were rapidly killed with a greater than 90% reduction in viable counts occurring within the first 30 min of reaction time. Dialyzed LAL extracts also possessed considerable antifungal activity. The role of the Limulus polyphemus amoebocyte in defense against microbial invasion and dissemination is discussed.     

`Every dogma has its day'*: a personal look at carbon metabolism in photosynthetic bacteria

Dogmas are unscientific. What is perhaps the greatest biological dogma of all time, the `unity of biochemistry' is, in the main, still having its day. According to present knowledge, the exceptions to this dogma are mere details when seen in relation to the biosystem as a whole. Nevertheless the exceptions are scientifically interesting and the understanding of them has led to a better comprehension of photosynthesis and ecology. Until the discovery of ¹⁴C, photosynthetic CO₂ fixation was like a slightly opened black box. With ¹⁴C in hand scientists mapped out the path of carbon in green plant photosynthesis in the course of a few years. The impressive reductive pentose phosphate cycle was almost immediately assumed to be universal in autotrophs, including anoxygenic phototrophs, in spite of the odd observation to the contrary. A new dogma was born and held the field for about two decades. Events began to turn when green sulfur bacteria were found to contain ferredoxin-coupled ketoacid-oxidoreductases. This led to the formulation of a novel CO₂-fixing pathway, the reductive citric acid cycle, but its general acceptance required much work by many investigators. However, the ice had now been broken and after some years a third mechanism of CO₂ fixation was discovered, this time in Chloroflexus, and then a fourth in the same genus. One consequence of these discoveries is that it has become apparent that oxygen is an important factor that determines the kind of CO₂-fixing mechanism an organism uses. With the prospect of the characterization of hordes of novel bacteria forecast by molecular ecologists we can expect further distinctive CO₂ fixation mechanisms to turn up. This revised version was published online in August 2006 with corrections to the Cover Date.     

A Pact with the Embryo: Viktor Hamburger,Holistic and Mechanistic Philosophy in the Development of Neuroembryology, 1927–1955

Viktor Hamburger was a developmental biologist interested in the ontogenesis of the vertebrate nervous system. A student of Hans Spemann at Freiburg in the 1920s, Hamburger picked up a holistic view of the embryo that precluded him from treating it in a reductionist way; at the same time, he was committed to a materialist and analytical approach that eschewed any form of vitalism or metaphysics. This paper explores how Hamburger walked this thin line between mechanistic reductionism and metaphysical vitalism in light of his work on the factors influencing growth of neurons into limb buds, and the discovery of nerve growth factor, work carried out with Rita Levi-Montalcini and Stanley Cohen.     

Modeling T Cell Proliferation and Death in Vitro Based on Labeling Data: Generalizations of the Smith–Martin Cell Cycle Model

The fluorescent dye carboxyfluorescein diacetate succinimidyl ester (CFSE) classifies proliferating cell populations into groups according to the number of divisions each cell has undergone (i.e., its division class). The pulse labeling of cells with radioactive thymidine provides a means to determine the distribution of times of entry into the first cell division. We derive in analytic form the number of cells in each division class as a function of time based on the distribution of times to the first division. Choosing the distribution of time to the first division to fit thymidine labeling data for T cells stimulated in vitro under different concentrations of IL-2, we fit CFSE data to determine the dependence of T cell kinetic parameters on the concentration of IL-2. As the concentration of IL-2 increases, the average cell cycle time is shortened, the death rate of cells is decreased, and a higher fraction of cells is recruited into division. We also find that if the average cell cycle time increases with division class then the qualify of our fit to the data improves.     

Martin Gibbs (1922–2006): Pioneer of 14C research, sugar metabolism & photosynthesis; vigilant Editor-in-Chief of Plant Physiology; sage Educator; and humanistic Mentor

The very personal touch of Professor Martin Gibbs as a worldwide advocate for photosynthesis and plant physiology was lost with his death in July 2006. Widely known for his engaging humorous personality and his humanitarian lifestyle, Martin Gibbs excelled as a strong international science diplomat; like a personal science family patriarch encouraging science and plant scientists around the world. Immediately after World War II he was a pioneer at the Brookhaven National Laboratory in the use of ¹⁴C to elucidate carbon flow in metabolism and particularly carbon pathways in photosynthesis. His leadership on carbon metabolism and photosynthesis extended for four decades of working in collaboration with a host of students and colleagues. In 1962, he was selected as the Editor-in-Chief of Plant Physiology. That appointment initiated 3 decades of strong directional influences by Gibbs on plant research and photosynthesis. Plant Physiology became and remains a premier source of new knowledge about the vital and primary roles of plants in earth’s environmental history and the energetics of our green-blue planet. His leadership and charismatic humanitarian character became the quintessence of excellence worldwide. Martin Gibbs was in every sense the personification of a model mentor not only for scientists but also shown in devotion to family. Here we pay tribute and honor to an exemplary humanistic mentor, Martin Gibbs.     

崖沙燕繁殖期雄鸟的鸣叫行为

2003年3月～2004年4月在南充市郊的嘉陵江边记录了崖沙燕(Riparia riparia)繁殖期雄鸟的呜叫。声谱分析结果表明,崖沙燕繁殖期有8种呜叫(恫吓叫声、屈服叫声、求救叫声、警报叫声以及4种鸣唱声)。通过对其行为的实时观察,确定了每种呜叫的生物学意义。4种叫声是整个繁殖期的主要呜叫,而4种鸣唱声则主要出现在开春以后的集群求偶与筑巢期间。虽其鸣唱声仅有两种类型的短音节,但通过组合可形成含有多达4个或6个音节的鸣唱声。鸣唱声的持续时间分别为3184、1030、1274、1232ms。鸣唱声中的间歇时间分别占持续时间的47％、39％、50％、48％。     

Prey selection by nesting House Martins Delichon urbica Linné, 1758 (Aves: Hirundinidae) in Algiers suburbs (Algeria)

The diet of the House Martin Delichon urbica was analyzed in a suburban area in Pins maritimes, northeast of Algiers (Algeria). The diet was determined by analyzing 120 faecal samples collected from a breeding colony between April and September 2007. Insects were the most numerous prey types (99.86%). Hymenopterans were the dominant preys (56.99%), followed by Coleopterans (20.14%), Homopterans (14.22%), Heteropterans (5.45%), and Dipterans (3.10%). Division of the prey items into families demonstrated that the highest relative frequency was large Hymenopterans in the family Formicidae (54.0%). The dominant species in the diet was Tetramorium biskrensis, which comprised 32.6% of the diet. It was followed by Camponotus barbaricus (6.9%) and Monomorium salomonis (5.6%). Comparison between diet and availability of preys using the Savage index showed that T. biskrensis, Crematogaster scutelaris, Pheidole pallidula, Diptera sp. unident. and Aphidae sp. unident. were positively selected by D. urbica.     

Mangrove forests may serve as stable environments for the meiobenthic Echinoderes komatsui (Kinorhyncha: Cyclorhagida): distribution patterns and population dynamics in a subtropical estuary

Echinoderes komatsui (Kinorhyncha: Cyclorhagida) is a meiobenthic animal inhabiting the interstitial spaces of the sediment on a subtropical tidal flat along the Oura River, Japan. This species mostly occurred within 0–10?mm from the surface of the sediment, and the dispersion pattern was significantly patchy. The population dynamics of E. komatsui were investigated by monthly surveys from January 2014 to May 2016 at four sites along the river, and from April 2015 to May 2016 at one site in the mangrove forest. Echinoderes komatsui occurred all year round; however, the population density showed different patterns among the sampling sites in response to seasonal changes. On the tidal flat, the population density was high in winter, but very low in summer. In the mangrove forest, the density was high (or not low) throughout the year. As was shown in laboratory experiments, E. komatsui survived in 1–44 salinity seawater but died at 0 (salinity experiments), and died within 4.5 days at 40°C (temperature experiments). Therefore, the low population density recorded in summer on the tidal flat was likely caused by high temperature and fresh water. The shade offered by the mangrove forest suppressed the increase in temperature of the sediment in the summer, probably resulting in the higher population density at this site relative to the tidal flat population. Mangrove forests may also mitigate the disturbance of the sediment by summer typhoons and serve as stable environments that are fundamental in the sustainability of estuarine meiobenthic fauna.     

Scales of aboveground and below-ground competition in a semi-arid woodland detected from spatial pattern

Abstract. Semi-arid woodlands are two-phase mosaics of canopy and inter-canopy patches. We hypothesized that both aboveground competition (within canopy patches), and below-ground competition (between canopy patches), would be important structuring processes in these communities. We investigated the spatial pattern of trees in a Pinus edulis-Juniperus monosperma woodland in New Mexico using Ripley's K-function. We found strong aggregation of trees at scales of 2 to 4 m, which indicates the scale of canopy patches. Canopy patches were composed of individuals of both species. Crown centers of both species were always less aggregated than stem centers at scales less than canopy patch size, indicating morphological plasticity of competing crowns. In the smallest size classes of both species, aggregation was most intense, and occurred over a larger range of scales; aggregation decreased with increasing size as is consistent with density-dependent mortality from intraspecific competition. Within canopy patches, younger trees were associated with older trees of the other species. At scales larger than canopy patches, younger trees showed repulsion from older conspecifics, indicating below-ground competition. Hence, intraspecific competition was stronger than interspecific competition, probably because the species differ in rooting depth. Woodland dynamics depend on the scale and composition of canopy patches, aggregated seed deposition and facilitation, above- and below-ground competition, and temporal changes in the spatial scale of interactions. This woodland is intermediate in a grassland-forest continuum (a gradient of increasing woody canopy cover) and hence we expected, and were able to detect, the effects of both above- and below-ground competition.