Uncoupling of mitochondrial oxidative phosphorylation by thallium.

The mechanism of integration of λ$\text{bio}$ll, which is deleted of all the known λ recombination genes, was studied using $\text{bio}$ deleted hosts as recipients. The presence of $\text{rec}$BC DNase and $\text{exo}$I in the recipient cells affected the fate of λ$\text{bio}$ll DNA. In nine of ten $\text{imm}\text{λ}{}^{\mathrm{+}}$ transductants, insertion of the λ$\text{bio}$ll genome took place somewhere between J and N and the remaining one had abnormally permuted prophage λ. In this lysogen (#42), the sequence of prophage genes was similar to that of vegetative phage λ. The properties of lysogen #42 were compared with those of other lysogens.     

Subunit assembly and metabolic stability of E. coli RNA polymerase

Immunological cross-reaction was employed for identification of proteolytic fragments of E. coli RNA polymerase generated both in vitro and in vivo. Several species of partially denatured but assembled RNA polymerase were isolated, which were composed of fragments of the two large subunits, beta and beta', and the two small and intact subunits, alpha and sigma. Comparison of the rate and pathway of proteolytic cleavage in vitro of unassembled subunits, subassemblies, and intact enzymes indicated that the susceptibility of RNA polymerase subunits to proteolytic degradation was dependent on the assembly state. Using this method, degradation in vivo was found for some, but not all, of the amber fragments of beta subunit in merodiploid cells carrying both wild-type and mutant rpoB genes. Although the RNA polymerase is a metabolically stable component in exponentially growing cells of E. coli, degradation of the full-sized subunits was found in two cases, i.e., several temperature-sensitive E. coli mutants with a defect in the assembly of RNA polymerase and the stationary-phase cells of a wild-type E. coli. The in vivo degradation of RNA polymerase was indicated to be initiated by alteration of the enzyme structure.     

First reliable record of a fossil species of Anthomyiidae (Diptera), with comments on the definition of recent and fossil clades in phylogenetic classification

All previous records of fossil Anthomyiidae are shown to be unsubstantiated. A female anthomyiid of a new genus and species is hereby described from a piece of Dominican amber (Upper Eocene-Oligocene). Character analysis suggests that the fossil, Coenosopsites poinari gen. & sp. nov. , belongs to a Neotropical clade with two recent genera, Phaonantho Albuquerque and Coenosopsia Malloch. Evidence for a sister-group relationship between Coenosopsites poinari and the genus Coenosopsia is provided. Clades are the only acceptable units of phylogenetic classification. Combining fossil and recent clades in phylogenetic classification requires them to be temporally delimited. Proper application of phylogenetic definitions is essential for this purpose. It is proposed that the units of phylogenetic classification should be taxa for recent clades and plesia for fossil clades. A taxon is defined as node-based with reference to its recent species, while a plesion is defined as apomorphy-based. The term lineage is proposed for a recent clade defined as stem-based with reference to its recent sister group. Individual recent species represent clades that can be incorporated into phylogenetic classification as minimal taxon units. Individual fossil species may not represent clades and thus do not count as proper units of phylogenetic classification. However, the names of fossil species are readily construed also to signify plesia with the fossil species as their only known component. As such, they are proper units of phylogenetic classification.     

The earliest fossil record of the extant rove beetle genus Phloeocharis from mid-Cretaceous Kachin amber of northern Myanmar and its biogeographic implications (Coleoptera: Staphylinidae: Phloeocharinae)

Phloeocharis Mannerheim is the largest genus within the problematic rove beetle subfamily Phloeocharinae, with a single extinct and 44 recent species recorded from the Holarctic Region. Until now, the oldest fossil record of Phloeocharis was known from Late Cretaceous (Turonian) amber from New Jersey, USA. Here we describe 2Phloeocharis burmana n. sp. from mid-Cretaceous (Albian–Cenomanian) Kachin amber from northern Myanmar, as the earliest extinct species of this genus. Our finding also sheds light on the biogeography of Phloeocharis, since no recent or extinct species have so far been recorded from the Oriental Region. Furthermore, the discovery of 2P. burmana n. sp. extends the Mesozoic diversity of the phloeocharine rove beetles both taxonomically and morphologically, particularly from Kachin amber.     

First fossil record of Brachyptera (Plecoptera: Taeniopterygidae) in Eocene Baltic amber

The extant taeniopterygid genus Brachyptera Newport, 1848 is reported from the Eocene Baltic amber for the first time. A new species, Brachyptera dewalti n. sp. (Plecoptera: Taeniopterygidae), is described and illustrated based on a well-preserved female in the amber, distinguished by the presence of three well-developed ocelli, the dark color of antennae, maxillary palps, head, prothorax, and abdominal segments, the CuA vein of forewing with three branches, the nearly rhombus, dark brown postgenital plate, and the four-segmented cerci. It is the fourth taeniopterygid species known from the Baltic amber.     

A remarkable new fossil species of Amplectister with peculiar hindleg modifications (Coleoptera: Histeridae): further evidence for myrmecophily in Cretaceous clown beetles

Myrmecophily is a phenomenon of the symbiosis of organisms that depend on various ant (Formicidae) societies. Such interspecies associations are found in several unrelated lineages within the clown beetle family Histeridae. Recent studies have suggested that the origin of myrmecophily can be traced back to mid-Cretaceous based on a few fossil records from Kachin amber from northern Myanmar. Here, we describe a remarkable new species, Amplectister terapoides n. sp., from Kachin amber. This is the second species of the extinct genus Amplectister Caterino and Maddison, which has been found from the same amber deposit and has also been considered to be myrmecophilous. The new species here described has the most heavily modified hindlegs in any fossil histerids or even beetles discovered until now, indicating further evidence for ant colony association. Our discovery demonstrates that significant and diverse morphological adaptations to myrmecophily had already occurred during the Cretaceous.     

Packaging of coliphage lambda DNA. I. The role of the cohesive end site and the gene A protein

The cohesive ends of the DNA of bacteriophage λ particles are normally formed by the action of a nuclease on the cohesive end sites (cos) of concatemeric λ DNA (reviewed by Hohn et al., 1977). The nuclease also cuts the cos site of an integrated prophage, and DNA located to the right is preferentially packaged into phage particles. This process occurs with approximately the same efficiency and rate in a single lysogen as in a tandem polylysogen. Thus, the rate of cos cutting does not increase when the number of cos sites per molecule increases, an hypothesis that has been proposed to explain why cohesive ends are not formed in circular monomers of λ DNA. We propose instead that the interaction of Ter with cos is influenced by the configuration of the DNA outside of cos during packaging, and that this configuration is different for circular monomers than for other forms of λ DNA. A model that gives rise to such a difference is described.We also found that missense mutations in the λ A gene changed the efficiency of packaging of phage relative to host DNA. This was not the case for missense mutations in several phage genes required for capsid formation. Thus, the product of gene A plays a role in determining packaging specificity, as expected if it is or is part of the nuclease that cuts λ DNA at cos.     

Characterization of the mutant lytic state in lambda expression systems

The two propagative phases of bacteriophage lambda, lysogeny and lysis, can be used in concert to enhance productivity of recombinant expression systems. Lambda vectors carrying mutations to prevent both cell lysis and lambda DNA packaging in the lytic state have been shown to yield 100% stability of the product gene in lysogeny and to produce up to 15% of total cell protein as product beta-galactosidase in a mutant lytic state.(14) Despite these mutations, partial lysis of the culture was observed following induction of the cells from a lysogenic phase into the lytic state. To understand better the phage-host cell interactions and to investigate the possible cause(s) of lysis in these highly productive expression systems, we have made a detailed study of the suppressor-free system JM105(NM1070). We have found high levels of product (15% of total cell protein as beta-glactosidase) to be due chiefly to a high-copy number of lambda DNA in the mutant lytic state. There is partial lysis of the culture even in this suppressor-free system caused by a low-level natural suppression of the amber mutation in gene S of NM1070, resulting in accumulation of lambda endolysin. We have also monitored changes in cell growth and morphology upon induction of the lysogen. There is a slight increase in cell number that follows a linear relationship with time and a 25-fold increase in cell volume during recombinat protein production in the mutant lytic state.