Method to estimate genotype probabilities at individual loci in farm livestock

Summary A Bayesian method to estimate genotype probabilities at a single locus using information on the individual and all its relatives and their mates has been developed. The method uses data over several generations, can deal with large numbers of individuals in large livestock families and allows for missing information. It can be extended to multiple alleles and can be used for autosomal or sex-linked loci. The allele frequencies and the form of expression (dominance, penetrance) must be specified. An algorithm using the method and involving an iterative procedure has been developed to calculate the genotype probabilities for practical use in livestock breeding. The method and algorithm were used to determine the accuracy of estimating genotype probabilities of sires for a female sex-limited trait, such as genetic variants of milk proteins. Data were similated and genotype probabilities estimated for 100 sires (20 replicates) with 3, 6 and 12 female offspring per sire, for different population frequencies, for additive and dominance gene action and for variable genotypic expression. Such simulation is useful in the design of testing systems for the use of information on specific genetic loci in selection.Prepared during a leave at Centre for Genetic Improvement of Livestock, Guelph, Canada     

A statistical model of the reproduction of aphids

1. The logistic function has been generally used to describe the reproductive process of a “population” of animal. However, this model can not give us any information about the reproductive process of “individuals” in the population. In this study a statistical model on the basis of the reproduction of individuals of barley aphid is presented to find the proportion of the mature individuals, the heterogeneity in reproductive ability of the aphids, etc.
2. The model is constructed as follows:
3. The probability that j insects are found on a plant at time t₀ is represented as Q(j).
4. The probability that h individuals of j have reproductive ability, say, mature individuals, in the period t₀ to t₁ is represented as B(h/j)=_jC_hw^h(1−w)^j−h, where w is the proportion of mature individuals.
5. In a population with a homogeneous reproductive ability, the probability that each parent lays i offspring in the period t₀ to t₁ is represented as P(i/m)=e^−mmⁱ/i!, where m is mean. And, in a population, m changes according to the gamma distribution. Hence the probability that a parent lays i offspring between t₀ and t₁ is represented as , where p and k are parameters of negative binomial distribution. The probability that h parents on a plant lays s offspring is represented as .
6. From the assumptions mentioned above, the probability that s offspring are to be found at time t₁ on a plant with the original j individuals at time t₀ is represented by
7. The experimental populations were demonstrated to fit well to the model.

     

Le Mésolithique. Continuité et développement métaphysique

The Mesolithic is a fascinating period, where ancient traditions are tilting towards a new paradigm. Many changes can be recognised without being able to establish a real split with the Palaeolithic. Far from being just a bridge towards the Neolithic, the Mesolithic is truly a new and stable metaphysical structure. In our article, we are interested in the structural mechanisms by which Palaeolithic metaphysics slides towards the Mesolithic, where the individual occupies a central role.     

Short communication: Variability of response to feed restriction in lactating Charolais cows

Involuntary temporary feed restriction on commercial cattle is likely to become more frequent with forage shortages in the context of climate change. If general consequences of feed restriction have been the subject of an abundant scientific literature, focus on the inter-individual variability of response is scarce. Here, we explore the response profile in terms of BW, body condition score, milk production, calf weight and cyclicity resumption of 293 lactations from 169 Charolais cows during a winter feed restriction in early lactation and its subsequent recovery at grazing using a principal component analysis followed by a hierarchical clustering on principal component. Results show a very continuous range of response profiles that was divided into three clusters: one with light animals having an intermediate response in terms of milk production and body maintenance, one with animals prioritising body maintenance and cyclicity resumption over milk production and calf weight, and the last one with animals prioritising milk production and calf weight over the rest. Among the animals performing more than one lactation, 57% remain in the same cluster on two successive lactations. This work highlights that an average group response to feed restriction may hide various resilience individual profiles. Further studies are required to determine the existence of a genetic component as well as the consequences of not taking this phenomenon into consideration with the regular use of feed restriction in commercial farms.     

An experimental test of the efficiency of family selection in chickens

Summary Responses to single trait selection on individual phenotype and sire-family mean phenotype for survivor's egg weight and rate of lay were measured for a single generation in 13 replicates. Each replicate-selection criterion-trait subclass consisted of eight sire families or 72 females measured and was reproduced from the best 25% of the families or individuals. The realized heritability of egg weight was 0.39 and that of rate of lay was 0.31, both of which were significantly greater than zero but not significantly different from the predicted values based on halfsib correlations in the base population.The standardized response to sire-family selection was less than the response to individual selection for both traits and the difference was significant for rate of lay (0.10; 0.31) but not for egg weight (0.22; 0.39). The predicted responses to sire-family selection were less than those for individual selection for both traits, and the observed responses to sire-family selection were not significantly different from the predicted values for either trait.These experimental results do not disagree with the theoretical expectations of the relative efficiencies of individual and sire-family selection.Journal paper no. 7479, Purdue University, Agricultural Experiment Station. This investigation was conducted as a part of the cooperative research of the NC-89 Regional Poultry Breeding Project entitled Nature and Utilization of Genetic Variation in Poultry Improvement     

Breakup and re-formation of colony in the first-instar larvae of the winter cherry bug,Acanthocoris sordidus thunberg (Hemiptera: Coreidae), in relation to the defence against their enemies

The winter cherry bug, Acanthocoris sordidusThunberg , lives in aggregation especially in their early larval instars. Using the 1st-instar larvae of this species, the author tried to clarify both the processes and the mechanisms of the breakup and later re-formation of colony in relation to the defence against their enemies. The results obtained were summarized as follows.

1. In the field population, there is a high possibility of dispersal of the 1st-instar larvae from a colony possibly through the disturbance by some predators but they can re-form a colony with each other or join, with colonies of different instar larvae.
2. The individuals in a colony immediately disperse through the attack of predatory coccinellid beetle, Harmonica axyridis but tend to re-form a colony in a short time.
3. The breakup of colony is caused by the secretion from the attacked individual.
4. The formation of colony is attributed to the habit closely related with the senses of smell and/or contact.

From these results, it was concluded that the dispersal of 1st-instar larvae from a colony, followed by the re-formation of a colony, is an an adaptive behaviour to escape from the attack by their predators.     

Plasma proteins δ15N vs plasma urea as candidate biomarkers of between-animal variations of feed efficiency in beef cattle: Phenotypic and genetic evaluation

Identifying animals that are superior in terms of feed efficiency may improve the profitability and sustainability of the beef cattle sector. However, measuring feed efficiency is costly and time-consuming. Biomarkers should thus be explored and validated to predict between-animal variation of feed efficiency for both genetic selection and precision feeding. In this work, we aimed to assess and validate two previously identified biomarkers of nitrogen (N) use efficiency in ruminants, plasma urea concentrations and the ¹⁵N natural abundance in plasma proteins (plasma δ¹⁵N), to predict the between-animal variation in feed efficiency when animals were fed two contrasted diets (high-starch vs high-fibre diets). We used an experimental network design with a total of 588 young bulls tested for feed efficiency through two different traits (feed conversion efficiency [FCE] and residual feed intake [RFI]) during at least 6 months in 12 cohorts (farm × period combination). Animals reared in the same cohort, receiving the same diet and housed in the same pen, were considered as a contemporary group (CG). To analyse between-animal variations and explore relationships between biomarkers and feed efficiency, two statistical approaches, based either on mixed-effect models or regressions from residuals, were conducted to remove the between-CG variability. Between-animal variation of plasma δ¹⁵N was significantly correlated with feed efficiency measured through the two criteria traits and regardless of the statistical approach. Conversely, plasma urea was not correlated to FCE and showed only a weak, although significant, correlation with RFI. The response of plasma δ¹⁵N to FCE variations was higher when animals were fed a high-starch compared to a high-fibre diet. In addition, we identified two dietary factors, the metabolisable protein to net energy ratio and the rumen protein balance that influenced the relation between plasma δ¹⁵N and FCE variations. Concerning the genetic evaluation, and despite the moderate heritability of the two biomarkers (0.28), the size of our experimental setup was insufficient to detect significant genetic correlations between feed efficiency and the biomarkers. However, we validated the potential of plasma δ¹⁵N to phenotypically discriminate two animals reared in identical conditions in terms of feed efficiency as long as they differ by at least 0.049 g/g for FCE and 1.67 kg/d for RFI. Altogether, the study showed phenotypic, but non-genetic, relationships between plasma proteins δ¹⁵N and feed efficiency that varied according to the efficiency index and the diet utilised.     

Design a system for measuring individual cow feed intake in commercial dairies

Monitoring individual cow feed intake is necessary for calculating the cow individual feed efficiency. The cost and maintenance time necessary for research systems make them impractical for most of the commercial producers. We developed a measurement system with producer convenience and low investment as key design criteria. The goal of this study was to design the system and validate its ability to rank cows by their feed conversion efficiency in commercial farms. The new system consisted of three principal parts: (a) a hanging weighing system, (b) a visual cow identification system and (c) an automatic cleaning system. The weighing system consisted of hanging a single load cell to provide feed mass measurements. The image-based cow identification system (replacing Radio-Frequency Identification) entailed cameras installed above the feeding area and an image processing algorithm that recognized cows by their collar numbers. The new system worked within normal farm routines: the feed supplying truck distributed the animal feed, and a tractor cleaned feed residual. To validate the accuracy and convenience of the system and to rank the cows by their efficiency, an experiment with six scales and 12 cows was conducted in a research barn, succeeded by eight-scale system in a commercial farm with 16 cows. The feed intake of each cow participating in the experiments was monitored for one month. The validation experiment showed that the system had the following specification: scales were accurate within 120 g; the visual cow identification rate was greater than 96%; feeding duration was accurate to 52 s; and routine farm practices (feed distribution, pushing, and residual removal) continued as usual. The cost for a feeding station (utilized consequently for a number of cows) was about 1 500 USD. An example of application of the system to rank cows by their efficiency under commercial conditions was shown. The system can potentially be used for ranking cows by their efficiency in commercial facilities.     

门诊高血压患者健康教育加个体化治疗的效果观察

摘要目的：探讨门诊高血压患者健康教育加个体化治疗的效果。方法：选取在本院门诊收治原发性高血压的患者258例,随机均分为观察组和对照组,每组129例。观察组使用健康教育和个体化治疗,而对照组使用常规治疗。记录并比较两组治疗前后对高血压病掌握情况,血压下降率,服药依从性,治疗后达标、并发症情况。结果：治疗前,观察组对高血压病掌握情况与对照组差异无统计学意义（P〉0．05）;治疗后,观察组对高血压诊断（91．5％）、高血压病因（98．4％）、高血压症状（100．0％）、高血压并发症（92．2％）掌握情况明显比对照组要好,差异有统计学意义（P〈0．05）;观察组服药依从性明显好于对照组,差异具有统计学意义（P〈0．05）;观察组的血压下降率为81．4％,明显高于对照组49．6％,差异具有统计学意义（P〈0．05）;观察组的达标率高达74．4％,明显高于对照组的34．9％,差异具有统计学意义（P〈0．01）;观察组未达标率和并发症发生率分别为25．6％和9-3％,明显低于对照组的65．1％和20．9％,差异有统计学意义（P〈0．01）。结论：对不同高血压患者采用健康教育加个体化的治疗方法,对提高高血压的控制率和降低相应并发症的发生率有非常好的临床效果,值得临床进一步推广和应用。